introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26649268

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771831 GT-AG 0 1.6395770920190808e-05 128 PHUM607990-RA 26649268 1 2619976 2620103 Pediculus humanus 121224 TCT|GTTAGTATAA...TAATTTTTAACT/TAATTTTTAACT...TTTAG|AAA 0 1 1.804
147771832 GT-AG 0 0.0218646179871566 70 PHUM607990-RA 26649268 2 2619784 2619853 Pediculus humanus 121224 GAT|GTATGTTGAA...CTCTTTTTAAAA/CTCTTTTTAAAA...TTCAG|TGG 2 1 9.953
147771833 GT-AG 0 9.668234095992148e-05 79 PHUM607990-RA 26649268 3 2619614 2619692 Pediculus humanus 121224 ATA|GTAAGTTAAT...TTATTTTTATTT/ATTTTTTTTATT...TTTAG|CGA 0 1 16.032
147771834 GT-AG 0 0.0265674368851958 81 PHUM607990-RA 26649268 4 2619269 2619349 Pediculus humanus 121224 AAT|GTATATATTT...TTATATTTAAAT/AATATGTTTATA...TTCAG|AAG 0 1 33.667
147771835 GT-AG 0 1.000000099473604e-05 101 PHUM607990-RA 26649268 5 2618940 2619040 Pediculus humanus 121224 CAG|GTAATTATAA...TTTCTTTTGAAA/TTTATTCTGATG...TTCAG|GTG 0 1 48.898
147771836 GT-AG 0 2.8848158501931343e-05 77 PHUM607990-RA 26649268 6 2618630 2618706 Pediculus humanus 121224 AAT|GTGAGTTTGT...TTTTTCTTAATC/TTTTTCTTAATC...TACAG|GTA 2 1 64.462
147771837 GT-AG 0 4.008817939282092e-05 76 PHUM607990-RA 26649268 7 2618322 2618397 Pediculus humanus 121224 GAA|GTAAAATTTT...TTGTTATTAAAT/ATAAAATTCATT...AACAG|GTT 0 1 79.96

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);