introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26649258

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771773 GT-AG 0 1.000000099473604e-05 2045 PHUM607610-RA 26649258 1 2506566 2508610 Pediculus humanus 121224 CAG|GTACGAACCT...ATTTTTTTATTT/TATTTTTTTATT...AAAAG|AAT 1 1 6.15
147771774 GT-AG 0 1.000000099473604e-05 127 PHUM607610-RA 26649258 2 2506237 2506363 Pediculus humanus 121224 TGG|GTGAGTGTCA...ATTTGTTTGATT/ATTTGTTTGATT...TTTAG|GTC 2 1 18.573
147771775 GT-AG 0 1.000000099473604e-05 715 PHUM607610-RA 26649258 3 2505365 2506079 Pediculus humanus 121224 CAG|GTAAAAAAAA...TCCGTTGTGATT/TCCGTTGTGATT...TTTAG|ACG 0 1 28.229
147771776 GT-AG 0 1.000000099473604e-05 85 PHUM607610-RA 26649258 4 2505084 2505168 Pediculus humanus 121224 CAG|GTACGTCAAA...AAATTTTTGTTT/AGAAGAATAAGA...TTTAG|AAC 1 1 40.283
147771777 GT-AG 0 1.000000099473604e-05 93 PHUM607610-RA 26649258 5 2504791 2504883 Pediculus humanus 121224 GAA|GTAAGTGTCT...TCGGTTTTAAAA/AGGTTTTTCATT...TACAG|GAC 0 1 52.583
147771778 GT-AG 0 0.0001349768918842 78 PHUM607610-RA 26649258 6 2504421 2504498 Pediculus humanus 121224 CCA|GTAAGTTTCT...GAATTTTTGCTT/TTTTGCTTTAAT...TCAAG|GCG 1 1 70.541
147771779 GT-AG 0 1.000000099473604e-05 79 PHUM607610-RA 26649258 7 2504156 2504234 Pediculus humanus 121224 CTG|GTAATTATCA...TTATTATTATTC/TTATTATTCAAC...TACAG|AAG 1 1 81.98
147771780 GT-AG 0 0.0001865064959349 101 PHUM607610-RA 26649258 8 2503885 2503985 Pediculus humanus 121224 AAA|GTTTGTATAT...TTAGTTTTAAAA/AAAAATTTAATT...TAAAG|ATG 0 1 92.435

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);