introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26649253

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771747 GT-AG 0 0.0001760070928297 305 PHUM603440-RA 26649253 2 1042616 1042920 Pediculus humanus 121224 AGC|GTAAGTATAA...TTGTTTTTAAAT/TTGTTTTTAAAT...CACAG|CAT 1 1 19.142
147771748 GT-AG 0 1.000000099473604e-05 88 PHUM603440-RA 26649253 3 1043190 1043277 Pediculus humanus 121224 CAG|GTAGAAGAGG...TTTTTTTTGAAT/TTTTTTTTGAAT...TTCAG|TTG 0 1 33.566
147771749 GT-AG 0 1.000000099473604e-05 97 PHUM603440-RA 26649253 4 1043491 1043587 Pediculus humanus 121224 CCG|GTGAGTTTTC...AAAACTTTAATT/CTTTAATTAATA...TTTAG|AAT 0 1 44.987
147771750 GT-AG 0 0.0021092602012725 114 PHUM603440-RA 26649253 5 1043812 1043925 Pediculus humanus 121224 ACG|GTAACCGCCA...TTTTTTGTGATT/TATTTATTTATT...TATAG|ATT 2 1 56.997
147771751 GT-AG 0 0.0253061129000758 76 PHUM603440-RA 26649253 6 1044122 1044197 Pediculus humanus 121224 GAG|GTACCCAAAA...TACCTTTTAAAA/TTTTTTGTGACA...TTCAG|GAC 0 1 67.507
147771752 GT-AG 0 1.000000099473604e-05 78 PHUM603440-RA 26649253 7 1044332 1044409 Pediculus humanus 121224 CAA|GTGAGTTTTC...ATATTATTATTA/TATATTATTATT...TTCAG|TTC 2 1 74.692
147771753 GT-AG 0 1.4955543875120406e-05 230 PHUM603440-RA 26649253 8 1044643 1044872 Pediculus humanus 121224 AAG|GTACGTTCAG...AAACGTTTAAAG/AAACGTTTAAAG...TTCAG|TCA 1 1 87.185
147772345 GT-AG 0 1.000000099473604e-05 3553 PHUM603440-RA 26649253 1 1038810 1042362 Pediculus humanus 121224 AAG|GTAAAATTTT...ATGTTTTTATTA/AATGTTTTTATT...TGCAG|GCT   0 5.737

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);