introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26649251

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771737 GT-AG 0 0.0002674634583088 99 PHUM604490-RA 26649251 1 1439467 1439565 Pediculus humanus 121224 CAG|GTAAATTTTC...AAAACCTTAAAC/AACTTGTTGAAA...TATAG|CTT 1 1 10.867
147771738 GT-AG 0 1.0729203122472916e-05 95 PHUM604490-RA 26649251 2 1439792 1439886 Pediculus humanus 121224 AAA|GTAAGGATTT...TTGGCTTTGATG/GATGTGTTAACT...AACAG|ACA 2 1 23.592
147771739 GT-AG 0 1.000000099473604e-05 87 PHUM604490-RA 26649251 3 1440137 1440223 Pediculus humanus 121224 CAG|GTGAGTGAGA...CACCCCTTGATA/TTAATCCTAATA...GATAG|GAT 0 1 37.669
147771740 GT-AG 0 0.0002045471783424 87 PHUM604490-RA 26649251 4 1440384 1440470 Pediculus humanus 121224 GAG|GTTACTATTA...TATCCCCTAACA/TGTGTTTTCATT...TGCAG|ATG 1 1 46.678
147771741 GT-AG 0 5.338254686926312e-05 96 PHUM604490-RA 26649251 5 1440668 1440763 Pediculus humanus 121224 GAA|GTAGGTGTTA...TTGATTTTGATT/TTGATTTTGATT...TAAAG|GAA 0 1 57.77
147771742 GT-AG 0 3.949172855129332e-05 95 PHUM604490-RA 26649251 6 1440930 1441024 Pediculus humanus 121224 AGG|GTACGTACGT...TTATTATTAATA/TTATTATTAATA...AACAG|TTT 1 1 67.117
147771743 GT-AG 0 1.000000099473604e-05 86 PHUM604490-RA 26649251 7 1441197 1441282 Pediculus humanus 121224 AAA|GTGAGTAGGA...TTATTATTATTT/ATTATTATTATT...ACCAG|GTG 2 1 76.802
147771744 GT-AG 0 1.000000099473604e-05 85 PHUM604490-RA 26649251 8 1441560 1441644 Pediculus humanus 121224 GAG|GTAATAACAA...GTATTATTAACA/GTATTATTAACA...TTTAG|AGT 0 1 92.399

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);