WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26649245

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
147771706	GT-AG	1.000000099473604e-05	82	PHUM606450-RA 26649245	1	2269180	2269261	Pediculus humanus 121224	AAG\|GTAAGACTAC...TTTTTTTTACAA/GTTTTTTTTACA...AACAG\|GTA	1	1	6.264
147771707	GT-AG	4.872404324820531e-05	95	PHUM606450-RA 26649245	2	2269447	2269541	Pediculus humanus 121224	AAA\|GTAATTTCAT...ATTATTTTATAT/TTTATATTGATA...ATCAG\|GAA	0	1	16.34
147771708	GT-AG	1.000000099473604e-05	78	PHUM606450-RA 26649245	3	2269773	2269850	Pediculus humanus 121224	CCC\|GTGAGTGAGA...TGATTCTTATTC/ATGATTCTTATT...TTCAG\|GAT	0	1	28.922
147771709	GT-AG	0.0016581346140616	81	PHUM606450-RA 26649245	4	2270116	2270196	Pediculus humanus 121224	TAT\|GTATTACTCA...AGAGTTTTATAA/ATTTTTCTCACG...AACAG\|TGC	1	1	43.355
147771710	GT-AG	1.000000099473604e-05	81	PHUM606450-RA 26649245	5	2270417	2270497	Pediculus humanus 121224	CAG\|GTGCGTGACG...TTATCATTAATA/ATTTTTATCATC...TTCAG\|GTC	2	1	55.338
147771711	GT-AG	1.000000099473604e-05	99	PHUM606450-RA 26649245	6	2270728	2270826	Pediculus humanus 121224	TAG\|GTGAGTAGTG...TTGTTATTAACA/TTGTTATTAACA...TGCAG\|TGC	1	1	67.865
147771712	GT-AG	1.000000099473604e-05	86	PHUM606450-RA 26649245	7	2271017	2271102	Pediculus humanus 121224	GAG\|GTAAATATAA...TTTTCTTTCTCA/TTCTTTCTCACT...CGCAG\|ACT	2	1	78.214
147771713	GT-AG	0.0013099482702662	92	PHUM606450-RA 26649245	8	2271419	2271510	Pediculus humanus 121224	CAG\|GTACATTTAA...GTAATTTTAATT/TTTTTTTTTACA...AACAG\|CAC	0	1	95.425

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);