introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26649229

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771603 GT-AG 0 1.000000099473604e-05 306 PHUM608690-RA 26649229 1 2689595 2689900 Pediculus humanus 121224 CAG|GTGCTAAAAA...TTTTTTTTAATT/TTTTTTTTAATT...TTCAG|ATA 2 1 8.238
147771604 GT-AG 0 1.000000099473604e-05 79 PHUM608690-RA 26649229 2 2690265 2690343 Pediculus humanus 121224 TTG|GTAAGAGTTA...TGAATTTTATTA/ATGAATTTTATT...TTTAG|CCA 0 1 25.571
147771605 GT-AG 0 1.000000099473604e-05 145 PHUM608690-RA 26649229 3 2690567 2690711 Pediculus humanus 121224 CCA|GTGAGTAAAT...TATTTTTTAAAT/TATATTTTTATT...ATAAG|ATG 1 1 36.19
147771606 GT-AG 0 9.453860856581244e-05 72 PHUM608690-RA 26649229 4 2690783 2690854 Pediculus humanus 121224 TTG|GTAAGTTTTT...TATTCATTAATT/ATATTATTCATT...TTTAG|GCC 0 1 39.571
147771607 GT-AG 0 0.0003691754589126 124 PHUM608690-RA 26649229 5 2691037 2691160 Pediculus humanus 121224 TAG|GTTTGCATTT...GTTTATTTATTT/TGTTTATTTATT...TTCAG|TTC 2 1 48.238
147771608 GT-AG 0 1.000000099473604e-05 329 PHUM608690-RA 26649229 6 2691688 2692016 Pediculus humanus 121224 TAG|GTAAGTTGAG...TTTTTCTTTTTT/TGATGATTTATT...TTTAG|CTA 1 1 73.333
147771609 GT-AG 0 1.000000099473604e-05 413 PHUM608690-RA 26649229 7 2692546 2692958 Pediculus humanus 121224 CCA|GTGGAAAAAT...TTTTTTTTTTCT/TTTTTTTTCTTC...ATAAG|TTC 2 1 98.524

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);