introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 26649217

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771510 GT-AG 0 1.000000099473604e-05 399 PHUM601490-RA 26649217 1 175732 176130 Pediculus humanus 121224 GAG|GTGAGTTGAA...AAATTTTTAATG/ATGTAATTTATT...TTAAG|GAC 0 1 48.098
147771511 GT-AG 0 1.000000099473604e-05 95 PHUM601490-RA 26649217 2 176310 176404 Pediculus humanus 121224 CAG|GTGAGTAGCG...TTATTGTTATTG/AAGTTTGTTATT...TGCAG|CAT 2 1 55.419
147771512 GT-AG 0 1.2475729629273168e-05 87 PHUM601490-RA 26649217 3 176545 176631 Pediculus humanus 121224 AGC|GTAAGTAGTC...TTTTTTTTTTTT/TCGTGATTTACG...TTTAG|AAT 1 1 61.145
147771513 GT-AG 0 0.0003265608325827 77 PHUM601490-RA 26649217 4 176865 176941 Pediculus humanus 121224 AAA|GTATTAAAAA...TTTTTTTTATAC/TTTTTTTTTATA...ATCAG|AGA 0 1 70.675
147771514 GT-AG 0 1.000000099473604e-05 84 PHUM601490-RA 26649217 5 177158 177241 Pediculus humanus 121224 GGA|GTGAGTTGCT...GTTTGTTTACCG/ATTTTTTTTAAT...TTAAG|GTC 0 1 79.509
147771515 GT-AG 0 0.0028846020233714 95 PHUM601490-RA 26649217 6 177514 177608 Pediculus humanus 121224 ACT|GTAAGTTTTT...ATTATTTTATTA/TATTATTTTATT...AAAAG|GTC 2 1 90.634

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);