introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 26649215

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771501 GT-AG 0 0.0001623122496571 74 PHUM604740-RA 26649215 1 1544398 1544471 Pediculus humanus 121224 ACC|GTAAGTTATT...TTTTGTTTGACA/TTTTGTTTGACA...TAAAG|GGT 0 1 5.751
147771502 GT-AG 0 1.000000099473604e-05 70 PHUM604740-RA 26649215 2 1543857 1543926 Pediculus humanus 121224 AAA|GTAAGAATGA...TTGTTCCTAACT/TTGTTCCTAACT...TTCAG|ATT 0 1 24.178
147771503 GT-AG 0 1.000000099473604e-05 76 PHUM604740-RA 26649215 3 1543555 1543630 Pediculus humanus 121224 ATG|GTAAAAATTT...TAAATTTTAAAA/TAAATTTTAAAA...TCAAG|GAG 1 1 33.02
147771504 GT-AG 0 1.000000099473604e-05 70 PHUM604740-RA 26649215 4 1543063 1543132 Pediculus humanus 121224 CAG|GTATTAAAGA...GTTTGCTTACAA/AGTTTGCTTACA...TTTAG|TTA 0 1 49.531
147771505 GT-AG 0 1.000000099473604e-05 84 PHUM604740-RA 26649215 5 1542681 1542764 Pediculus humanus 121224 GAG|GTTAGTCATT...ACCCTTTTAAAT/TATGTATTTAAA...TGCAG|ATT 1 1 61.189
147771506 GT-AG 0 3.433009824800733e-05 68 PHUM604740-RA 26649215 6 1542408 1542475 Pediculus humanus 121224 AAG|GTAATCCATT...TTCACTTTAAAA/ATTTATTTCACT...TCCAG|ATC 2 1 69.21
147771507 GT-AG 0 1.000000099473604e-05 115 PHUM604740-RA 26649215 7 1541932 1542046 Pediculus humanus 121224 AAG|GTTAGTTTTT...ACATTCTAAATC/TCCTTTTTTACA...TTTAG|GTT 0 1 83.333
147771508 GT-AG 0 7.723092374981819e-05 148 PHUM604740-RA 26649215 8 1541553 1541700 Pediculus humanus 121224 GTG|GTAAGTTTTT...TTTTTTTTAGGG/TCTACTATGAAA...TGAAG|GCT 0 1 92.371

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);