introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 26649209

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
147771473 GT-AG 0 1.000000099473604e-05 158 PHUM601680-RA 26649209 1 296430 296587 Pediculus humanus 121224 GAG|GTAGATGATT...GTAGTCTAAATT/TGTAGTCTAAAT...TCCAG|GTT 2 1 1.528
147771474 GT-AG 0 0.0103003459952929 728 PHUM601680-RA 26649209 2 295589 296316 Pediculus humanus 121224 TTC|GTTTTGTTTT...ATTTTTTTATCT/TTATTATTAATT...TTCAG|GAC 1 1 5.451
147771475 GT-AG 0 1.000000099473604e-05 75 PHUM601680-RA 26649209 3 295369 295443 Pediculus humanus 121224 CGG|GTGAGAAAAA...AAGTTTTTAAAA/AAGTTTTTAAAA...TACAG|GTA 2 1 10.486
147771476 GT-AG 0 1.000000099473604e-05 90 PHUM601680-RA 26649209 4 295150 295239 Pediculus humanus 121224 CAG|GTTTGCACAT...ATCATTTTCATT/ATCATTTTCATT...TTCAG|GCC 2 1 14.965
147771477 GT-AG 0 1.000000099473604e-05 223 PHUM601680-RA 26649209 5 294786 295008 Pediculus humanus 121224 CAG|GTTAGTATTT...ATTTATTTAATT/ATTTATTTAATT...ATTAG|GTA 2 1 19.861
147771478 GT-AG 0 0.0009945560042126 78 PHUM601680-RA 26649209 6 294575 294652 Pediculus humanus 121224 GTC|GTAAGTTTTT...TTTTTTTTGTTT/TATTGATTTATC...AACAG|GGA 0 1 24.479
147771479 GT-AG 0 0.0008549653172273 69 PHUM601680-RA 26649209 7 294401 294469 Pediculus humanus 121224 GAG|GTATGATTAA...TTTTTTTTATTA/TTTTTTTTTATT...TACAG|ATA 0 1 28.125

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);