genomes
Data license: ODbL · Data source: Larue & Roy, 2023
- taxonomy_id
- INTEGER (primary key), unique identifier for each species
- species
- TEXT, binomial name of the species
- family
- TEXT, taxonomic family of the species
- order
- TEXT, taxonomic order of the species
- phylum
- TEXT, taxonomic phylum of the species
- accession
- TEXT, accession number of the genome assembly
- n_minor_introns
- INTEGER, total number of minor introns in the genome
- n_major_introns
- INTEGER, total number of major introns in the genome
- percent_minor_introns
- REAL, percentage of minor introns in the genome
- busco_score
- REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
- minor_snRNAs
- TEXT, minor snRNAs found in the annotated transcriptome
- genome_version
- TEXT, version of the genome assembly
- source_url
- TEXT, URL for the source genome/annotation files
- source_metadata
- TEXT, additional metadata from the original data source
- minor_intron+
- INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)
1,575 rows sorted by percent_minor_introns descending
This data as json, CSV (advanced)
| taxonomy_id | species | family | order | phylum | accession | n_minor_introns | n_major_introns | percent_minor_introns ▲ | busco_score | minor_snRNAs | genome_version | source_url | source_metadata | minor_intron+ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37029 | Prionailurus bengalensis | Felidae | Carnivora | Chordata | GCF_016509475.1 | 663 | 190686 | 0.3464873085304862 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | Fcat_Pben_1.1_paternal_pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/509/475/GCF_016509475.1_Fcat_Pben_1.1_paternal_pri | GCF_016509475.1;PRJNA756971;SAMN16486448;JADZGN000000000.1;representative genome;37029;37029;Prionailurus bengalensis;;Pbe53;latest;Chromosome;Major;Full;2021/01/06;Fcat_Pben_1.1_paternal_pri;Texas A&M University;GCA_016509475.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/509/475/GCF_016509475.1_Fcat_Pben_1.1_paternal_pri;;;na | 1 |
| 80427 | Lacerta agilis | Lacertidae | Squamata | Chordata | GCF_009819535.1 | 654 | 188126 | 0.3464350037080199 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | rLacAgi1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/535/GCF_009819535.1_rLacAgi1.pri | GCF_009819535.1;PRJNA614516;SAMN12629509;WNMS00000000.1;representative genome;80427;80427;Lacerta agilis;;rLacAgi1;latest;Chromosome;Major;Full;2019/12/31;rLacAgi1.pri;Vertebrate Genomes Project;GCA_009819535.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/535/GCF_009819535.1_rLacAgi1.pri;;;na | 1 |
| 8524 | Zootoca vivipara | Lacertidae | Squamata | Chordata | GCF_011800845.1 | 653 | 187848 | 0.3464172603858865 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | UG_Zviv_1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/845/GCF_011800845.1_UG_Zviv_1 | GCF_011800845.1;PRJNA638687;SAMN14329711;JAATIO000000000.1;representative genome;8524;8524;Zootoca vivipara;;ELT05324;latest;Chromosome;Major;Full;2020/04/01;UG_Zviv_1;University of Glasgow;GCA_011800845.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/845/GCF_011800845.1_UG_Zviv_1;;;na | 1 |
| 10093 | Mus pahari | Muridae | Rodentia | Chordata | GCF_900095145.1 | 644 | 185299 | 0.3463426964177194 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | PAHARI_EIJ_v1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/145/GCF_900095145.1_PAHARI_EIJ_v1.1 | GCF_900095145.1;PRJNA387191;SAMEA3367645;FMBV00000000.2;representative genome;10093;10093;Mus pahari;;;latest;Chromosome;Major;Full;2017/04/28;PAHARI_EIJ_v1.1;EBI;GCA_900095145.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/145/GCF_900095145.1_PAHARI_EIJ_v1.1;;;na | 1 |
| 1735272 | Gigantopelta aegis | Peltospiridae | Mollusca | GCF_016097555.1 | 613 | 176410 | 0.3462826864305768 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | Gae_host_genome | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/097/555/GCF_016097555.1_Gae_host_genome | GCF_016097555.1;PRJNA727593;SAMN16968444;JAEHGF000000000.1;representative genome;1735272;1735272;Gigantopelta aegis;;Gae_Host;latest;Chromosome;Major;Full;2020/12/17;Gae_host_genome;Hong Kong University of Science and Technology;GCA_016097555.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/097/555/GCF_016097555.1_Gae_host_genome;;;na | 1 | |
| 111838 | Microtus oregoni | Cricetidae | Rodentia | Chordata | GCF_018167655.1 | 745 | 214409 | 0.346263606532995 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | Mior012 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/167/655/GCF_018167655.1_Mior012 | GCF_018167655.1;PRJNA729470;SAMN18478481;JAGKIF000000000.1;representative genome;111838;111838;Microtus oregoni;;MIOR12;latest;Contig;Major;Full;2021/04/26;Mior012;Oklahoma State Universtiy;GCA_018167655.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/167/655/GCF_018167655.1_Mior012;;;na | 1 |
| 188379 | Egretta garzetta | Ardeidae | Pelecaniformes | Chordata | GCF_000687185.1 | 498 | 143452 | 0.3459534560611323 | 82.7 | ["u12", "u6atac"] | ASM68718v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/185/GCF_000687185.1_ASM68718v1 | GCF_000687185.1;PRJNA253831;SAMN02596466;JJRC00000000.1;representative genome;188379;188379;Egretta garzetta;;BGI_Z169;latest;Scaffold;Major;Full;2014/05/09;ASM68718v1;College of Medicine and Forensics, Xi'an Jiaotong University;GCA_000687185.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/185/GCF_000687185.1_ASM68718v1;;;na | 1 |
| 191870 | Gracilinanus agilis | Didelphidae | Didelphimorphia | Chordata | GCF_016433145.1 | 605 | 174365 | 0.3457735611819169 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | AgileGrace | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/433/145/GCF_016433145.1_AgileGrace | GCF_016433145.1;PRJNA769689;SAMN16807781;JADWME000000000.1;representative genome;191870;191870;Gracilinanus agilis;;LMUSP501;latest;Chromosome;Major;Full;2021/01/06;AgileGrace;Nanjing Normal University;GCA_016433145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/433/145/GCF_016433145.1_AgileGrace;;;na | 1 |
| 59534 | Oryx dammah | Bovidae | Artiodactyla | Chordata | GCF_014754425.2 | 667 | 192246 | 0.3457517119115871 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | SCBI_Odam_1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/754/425/GCF_014754425.2_SCBI_Odam_1.1 | GCF_014754425.2;PRJNA694191;SAMN14518290;JABAEV000000000.1;representative genome;59534;59534;Oryx dammah;;SB20612;latest;Scaffold;Minor;Full;2020/09/25;SCBI_Odam_1.1;Smithsonian Conservation Biology Institute;GCA_014754425.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/754/425/GCF_014754425.2_SCBI_Odam_1.1;;;na | 1 |
| 6850 | Limulus polyphemus | Limulidae | Xiphosura | Arthropoda | GCF_000517525.1 | 606 | 174665 | 0.3457502952570591 | 91.8 | ["u11", "u12", "u4atac", "u6atac"] | Limulus_polyphemus-2.1.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/517/525/GCF_000517525.1_Limulus_polyphemus-2.1.2 | GCF_000517525.1;PRJNA238073;SAMN02953878;AZTN00000000.1;representative genome;6850;6850;Limulus polyphemus;;;latest;Scaffold;Major;Full;2014/01/03;Limulus_polyphemus-2.1.2;Washington University (WashU);GCA_000517525.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/517/525/GCF_000517525.1_Limulus_polyphemus-2.1.2;;;na | 1 |
| 198806 | Calidris pugnax | Scolopacidae | Charadriiformes | Chordata | GCF_001431845.1 | 575 | 165738 | 0.3457336467985064 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM143184v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/431/845/GCF_001431845.1_ASM143184v1 | GCF_001431845.1;PRJNA305421;SAMN03491621;LDEH00000000.1;representative genome;198806;198806;Calidris pugnax;;Ruff;latest;Scaffold;Major;Full;2015/11/04;ASM143184v1;BGI;GCA_001431845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/431/845/GCF_001431845.1_ASM143184v1;;;na | 1 |
| 61156 | Arvicanthis niloticus | Muridae | Rodentia | Chordata | GCF_011762505.1 | 669 | 192864 | 0.3456774813597681 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | mArvNil1.pat.X | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/505/GCF_011762505.1_mArvNil1.pat.X | GCF_011762505.1;PRJNA632612;SAMN12611849;JAAOMG000000000.1;representative genome;61156;61156;Arvicanthis niloticus;;mArvNil1;latest;Chromosome;Major;Full;2020/03/27;mArvNil1.pat.X;Vertebrate Genomes Project;GCA_011762505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/505/GCF_011762505.1_mArvNil1.pat.X;;;na | 1 |
| 9135 | Serinus canaria | Fringillidae | Passeriformes | Chordata | GCF_007115625.1 | 541 | 155992 | 0.3456140238799486 | 94.1 | ["u11", "u12", "u4atac", "u6atac"] | cibio_Scana_2019 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/115/625/GCF_007115625.1_cibio_Scana_2019 | GCF_007115625.1;PRJNA558035;SAMN12017177;VKJK00000000.1;representative genome;9135;9135;Serinus canaria;ecotype=domestic yellow;sc_yellow_7_cibi;latest;Scaffold;Major;Full;2019/07/18;cibio_Scana_2019;CIBIO-InBIO;GCA_007115625.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/115/625/GCF_007115625.1_cibio_Scana_2019;;;na | 1 |
| 9160 | Passer montanus | Passeridae | Passeriformes | Chordata | GCF_014805655.1 | 570 | 164616 | 0.3450655624568668 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | ASM1480565v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/805/655/GCF_014805655.1_ASM1480565v1 | GCF_014805655.1;PRJNA703052;SAMN07998528;JABBVY000000000.1;representative genome;9160;9160;Passer montanus;;IOZ18808;latest;Scaffold;Major;Full;2020/09/30;ASM1480565v1;Institute of Zoology, Chinese Academy of Sciences;GCA_014805655.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/805/655/GCF_014805655.1_ASM1480565v1;;;na | 1 |
| 34882 | Enhydra lutris | Mustelidae | Carnivora | Chordata | GCF_002288905.1 | 629 | 181674 | 0.3450299775648234 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM228890v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/288/905/GCF_002288905.1_ASM228890v2 | GCF_002288905.1;PRJNA407952;SAMN07211055;NSES00000000.1;representative genome;391180;34882;Enhydra lutris kenyoni;;GAN:26980312;latest;Scaffold;Major;Full;2017/09/11;ASM228890v2;BC Cancer Agency;GCA_002288905.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/288/905/GCF_002288905.1_ASM228890v2;;;na | 1 |
| 42100 | Phocoena sinus | Phocoenidae | Artiodactyla | Chordata | GCF_008692025.1 | 630 | 182024 | 0.3449144283727703 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | mPhoSin1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/025/GCF_008692025.1_mPhoSin1.pri | GCF_008692025.1;PRJNA606521;SAMN12325353;VOSU00000000.1;representative genome;42100;42100;Phocoena sinus;;mPhoSin1;latest;Chromosome;Major;Full;2019/09/26;mPhoSin1.pri;Vertebrate Genomes Project;GCA_008692025.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/025/GCF_008692025.1_mPhoSin1.pri;;;na | 1 |
| 9407 | Rousettus aegyptiacus | Pteropodidae | Chiroptera | Chordata | GCF_014176215.1 | 648 | 187263 | 0.34484410172901 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | mRouAeg1.p | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/176/215/GCF_014176215.1_mRouAeg1.p | GCF_014176215.1;PRJNA665208;SAMN14734550;JACASE000000000.1;representative genome;9407;9407;Rousettus aegyptiacus;;mRouAeg1;latest;Scaffold;Major;Full;2020/08/07;mRouAeg1.p;Bat1K;GCA_014176215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/176/215/GCF_014176215.1_mRouAeg1.p;;;na | 1 |
| 93162 | Marmota flaviventris | Sciuridae | Rodentia | Chordata | GCF_003676075.2 | 641 | 185284 | 0.344762673120882 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | GSC_YBM_2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/676/075/GCF_003676075.2_GSC_YBM_2.0 | GCF_003676075.2;PRJNA516936;SAMN10078668;QZWP00000000.2;representative genome;93162;93162;Marmota flaviventris;;SJ_83;latest;Scaffold;Major;Full;2019/05/24;GSC_YBM_2.0;Canada's Genomic Enterprise;GCA_003676075.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/676/075/GCF_003676075.2_GSC_YBM_2.0;;;na | 1 |
| 27622 | Molossus molossus | Molossidae | Chiroptera | Chordata | GCF_014108415.1 | 636 | 183848 | 0.3447453437696494 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | mMolMol1.p | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/108/415/GCF_014108415.1_mMolMol1.p | GCF_014108415.1;PRJNA665629;SAMN14734448;JACASF000000000.1;representative genome;27622;27622;Molossus molossus;;mMolMol1;latest;Scaffold;Major;Full;2020/08/07;mMolMol1.p;Bat1K;GCA_014108415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/108/415/GCF_014108415.1_mMolMol1.p;;;na | 1 |
| 30410 | Lagopus leucura | Phasianidae | Galliformes | Chordata | GCF_019238085.1 | 570 | 164816 | 0.3446482773632592 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | USGS_WTPT01 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/238/085/GCF_019238085.1_USGS_WTPT01 | GCF_019238085.1;PRJNA752366;SAMN12859112;JAHKMA000000000.1;representative genome;30410;30410;Lagopus leucura;;7727_CA_CO;latest;Scaffold;Major;Full;2021/07/15;USGS_WTPT01;United States Geological Survey;GCA_019238085.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/238/085/GCF_019238085.1_USGS_WTPT01;;;na | 1 |
| 9238 | Pygoscelis adeliae | Spheniscidae | Sphenisciformes | Chordata | GCF_000699105.1 | 481 | 139143 | 0.3444966481407208 | 82.7 | ["u11", "u12", "u6atac"] | ASM69910v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/105/GCF_000699105.1_ASM69910v1 | GCF_000699105.1;PRJNA261076;SAMN02596601;JMFP00000000.1;representative genome;9238;9238;Pygoscelis adeliae;;BGI_AS28;latest;Scaffold;Major;Full;2014/06/06;ASM69910v1;BGI;GCA_000699105.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/105/GCF_000699105.1_ASM69910v1;;;na | 1 |
| 9720 | Phoca vitulina | Phocidae | Carnivora | Chordata | GCF_004348235.1 | 637 | 184291 | 0.3444583838034262 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | GSC_HSeal_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/235/GCF_004348235.1_GSC_HSeal_1.0 | GCF_004348235.1;PRJNA605348;SAMN10150265;RXNX00000000.1;representative genome;9720;9720;Phoca vitulina;;PV1807;latest;Scaffold;Major;Full;2019/02/11;GSC_HSeal_1.0;Canada's Genome Enterprise (CGEN);GCA_004348235.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/348/235/GCF_004348235.1_GSC_HSeal_1.0;;;na | 1 |
| 34886 | Eumetopias jubatus | Otariidae | Carnivora | Chordata | GCF_004028035.1 | 635 | 183924 | 0.3440634160349807 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM402803v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/028/035/GCF_004028035.1_ASM402803v1 | GCF_004028035.1;PRJNA518921;SAMN09402722;SBAQ00000000.1;representative genome;34886;34886;Eumetopias jubatus;;GAN:26980396;latest;Scaffold;Major;Full;2019/01/15;ASM402803v1;Canada's Genomic Enterprise;GCA_004028035.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/028/035/GCF_004028035.1_ASM402803v1;;;na | 1 |
| 46514 | Patiria miniata | Asterinidae | Valvatida | Echinodermata | GCF_015706575.1 | 646 | 187128 | 0.3440305899645318 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM1570657v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/706/575/GCF_015706575.1_ASM1570657v1 | GCF_015706575.1;PRJNA683060;SAMN13694171;JADOBP000000000.1;representative genome;46514;46514;Patiria miniata;;m_02_andy;latest;Scaffold;Major;Full;2020/12/01;ASM1570657v1;Carnegie Mellon University;GCA_015706575.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/706/575/GCF_015706575.1_ASM1570657v1;;;na | 1 |
| 9767 | Balaenoptera acutorostrata | Balaenopteridae | Artiodactyla | Chordata | GCF_000493695.1 | 625 | 181106 | 0.3439149071980014 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | BalAcu1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/493/695/GCF_000493695.1_BalAcu1.0 | GCF_000493695.1;PRJNA237330;SAMN02192642;ATDI00000000.1;representative genome;310752;9767;Balaenoptera acutorostrata scammoni;;;latest;Scaffold;Major;Full;2013/10/31;BalAcu1.0;Korea Ocean Research & Development Institute;GCA_000493695.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/493/695/GCF_000493695.1_BalAcu1.0;;;na | 1 |
| 9258 | Ornithorhynchus anatinus | Ornithorhynchidae | Monotremata | Chordata | GCF_004115215.2 | 644 | 186633 | 0.3438756494390662 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | mOrnAna1.pri.v4 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/115/215/GCF_004115215.2_mOrnAna1.pri.v4 | GCF_004115215.2;PRJNA534073;SAMN08537700;RZJT00000000.2;representative genome;9258;9258;Ornithorhynchus anatinus;;Pmale09;latest;Chromosome;Major;Full;2020/11/06;mOrnAna1.pri.v4;Vertebrate Genomes Project;GCA_004115215.4;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/115/215/GCF_004115215.2_mOrnAna1.pri.v4;;;na | 1 |
| 103695 | Pogona vitticeps | Agamidae | Squamata | Chordata | GCF_900067755.1 | 638 | 184977 | 0.3437222207256956 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | pvi1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/067/755/GCF_900067755.1_pvi1.1 | GCF_900067755.1;PRJNA382134;SAMEA2300447;CEMB00000000.1;representative genome;103695;103695;Pogona vitticeps;;;latest;Scaffold;Major;Full;2017/02/28;pvi1.1;BRAEMBL;GCA_900067755.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/067/755/GCF_900067755.1_pvi1.1;;;na | 1 |
| 1047088 | Arvicola amphibius | Cricetidae | Rodentia | Chordata | GCF_903992535.2 | 641 | 185992 | 0.3434548016695868 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | mArvAmp1.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/992/535/GCF_903992535.2_mArvAmp1.2 | GCF_903992535.2;PRJNA687149;SAMEA994740;CAJEUG000000000.2;representative genome;1047088;1047088;Arvicola amphibius;;;latest;Chromosome;Major;Full;2021/05/15;mArvAmp1.2;Wellcome Sanger Institute;GCA_903992535.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/992/535/GCF_903992535.2_mArvAmp1.2;;;na | 1 |
| 59479 | Rhinolophus ferrumequinum | Rhinolophidae | Chiroptera | Chordata | GCF_004115265.1 | 642 | 186338 | 0.3433522301850465 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | mRhiFer1_v1.p | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/115/265/GCF_004115265.1_mRhiFer1_v1.p | GCF_004115265.1;PRJNA613604;SAMN09948510;RXPC00000000.1;representative genome;59479;59479;Rhinolophus ferrumequinum;;MPI-CBG mRhiFer1;latest;Chromosome;Major;Full;2019/05/16;mRhiFer1_v1.p;Vertebrate Genomes Project;GCA_004115265.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/115/265/GCF_004115265.1_mRhiFer1_v1.p;;;na | 1 |
| 51338 | Castor canadensis | Castoridae | Rodentia | Chordata | GCF_001984765.1 | 613 | 178009 | 0.3431828106280301 | 89.8 | ["u11", "u12", "u4atac", "u6atac"] | C.can genome v1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/984/765/GCF_001984765.1_C.can_genome_v1.0 | GCF_001984765.1;PRJNA371604;SAMN06187566;MTKA00000000.1;representative genome;51338;51338;Castor canadensis;;Ward;latest;Scaffold;Major;Full;2017/02/04;C.can genome v1.0;Hospital for Sick Children;GCA_001984765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/984/765/GCF_001984765.1_C.can_genome_v1.0;;;na | 1 |
| 128390 | Nipponia nippon | Threskiornithidae | Pelecaniformes | Chordata | GCF_000708225.1 | 511 | 148392 | 0.3431764302935468 | 91.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM70822v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/225/GCF_000708225.1_ASM70822v1 | GCF_000708225.1;PRJNA253829;SAMN02596464;JMFH00000000.1;representative genome;128390;128390;Nipponia nippon;;BGI_Y956;latest;Scaffold;Major;Full;2014/06/16;ASM70822v1;College of Medicine and Forensics, Xi'an Jiaotong University;GCA_000708225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/225/GCF_000708225.1_ASM70822v1;;;na | 1 |
| 146911 | Gekko japonicus | Gekkonidae | Squamata | Chordata | GCF_001447785.1 | 583 | 169307 | 0.3431632232621108 | 92.2 | ["u11", "u12", "u4atac", "u6atac"] | Gekko_japonicus_V1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/785/GCF_001447785.1_Gekko_japonicus_V1.1 | GCF_001447785.1;PRJNA308133;SAMN04157958;LNDG00000000.1;representative genome;146911;146911;Gekko japonicus;;JY-2015;latest;Scaffold;Major;Full;2015/11/25;Gekko_japonicus_V1.1;Nantong University;GCA_001447785.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/785/GCF_001447785.1_Gekko_japonicus_V1.1;;;na | 1 |
| 118141 | Megalops cyprinoides | Megalopidae | Elopiformes | Chordata | GCF_013368585.1 | 864 | 251028 | 0.3430041446334143 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | fMegCyp1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/368/585/GCF_013368585.1_fMegCyp1.pri | GCF_013368585.1;PRJNA667936;SAMN12623619;JABWDM000000000.1;representative genome;118141;118141;Megalops cyprinoides;;fMegCyp1;latest;Chromosome;Major;Full;2020/06/23;fMegCyp1.pri;Vertebrate Genomes Project;GCA_013368585.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/368/585/GCF_013368585.1_fMegCyp1.pri;;;na | 1 |
| 59463 | Myotis lucifugus | Vespertilionidae | Chiroptera | Chordata | GCF_000147115.1 | 608 | 176676 | 0.3429525507095959 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | Myoluc2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/147/115/GCF_000147115.1_Myoluc2.0 | GCF_000147115.1;PRJNA208947;SAMN02953645;AAPE00000000.2;representative genome;59463;59463;Myotis lucifugus;;;latest;Scaffold;Major;Full;2010/09/14;Myoluc2.0;Broad Institute;GCA_000147115.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/147/115/GCF_000147115.1_Myoluc2.0;;;na | 1 |
| 30419 | Opisthocomus hoazin | Opisthocomidae | Opisthocomiformes | Chordata | GCF_000692075.1 | 454 | 131938 | 0.342921022418273 | 77.6 | ["u11", "u6atac"] | ASM69207v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/692/075/GCF_000692075.1_ASM69207v1 | GCF_000692075.1;PRJNA263612;SAMN02302474;JMFL00000000.1;representative genome;30419;30419;Opisthocomus hoazin;;BGI_N306;latest;Scaffold;Major;Full;2014/05/19;ASM69207v1;BGI;GCA_000692075.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/692/075/GCF_000692075.1_ASM69207v1;;;na | 1 |
| 125878 | Nanorana parkeri | Dicroglossidae | Anura | Chordata | GCF_000935625.1 | 596 | 173211 | 0.342909088816906 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM93562v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/935/625/GCF_000935625.1_ASM93562v1 | GCF_000935625.1;PRJNA344660;SAMN02720813;JYOU00000000.1;representative genome;125878;125878;Nanorana parkeri;;BGI_ZX_2015;latest;Scaffold;Major;Full;2015/03/17;ASM93562v1;BGI-Shenzhen;GCA_000935625.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/935/625/GCF_000935625.1_ASM93562v1;;;na | 1 |
| 9402 | Pteropus alecto | Pteropodidae | Chiroptera | Chordata | GCF_000325575.1 | 614 | 178475 | 0.3428462943005991 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM32557v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/325/575/GCF_000325575.1_ASM32557v1 | GCF_000325575.1;PRJNA232518;SAMN01103203;ALWS00000000.1;representative genome;9402;9402;Pteropus alecto;;;latest;Scaffold;Major;Full;2013/12/04;ASM32557v1;BGI;GCA_000325575.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/325/575/GCF_000325575.1_ASM32557v1;;;na | 1 |
| 76717 | Lontra canadensis | Mustelidae | Carnivora | Chordata | GCF_010015895.1 | 651 | 189246 | 0.3428174220761781 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | GSC_riverotter_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/895/GCF_010015895.1_GSC_riverotter_1.0 | GCF_010015895.1;PRJNA611578;SAMN13049247;WMAJ00000000.1;representative genome;76717;76717;Lontra canadensis;;GAN:19392208;latest;Scaffold;Major;Full;2020/01/27;GSC_riverotter_1.0;Canada's Genomic Enterprise;GCA_010015895.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/015/895/GCF_010015895.1_GSC_riverotter_1.0;;;na | 1 |
| 42254 | Sorex araneus | Soricidae | Eulipotyphla | Chordata | GCF_000181275.1 | 576 | 167474 | 0.3427551324010711 | 95.7 | ["u11", "u12", "u4atac", "u6atac"] | SorAra2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/275/GCF_000181275.1_SorAra2.0 | GCF_000181275.1;PRJNA193513;SAMN00210854;AALT00000000.2;representative genome;42254;42254;Sorex araneus;;GB8-d;latest;Scaffold;Major;Full;2012/08/27;SorAra2.0;Broad Institute;GCA_000181275.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/275/GCF_000181275.1_SorAra2.0;;;na | 1 |
| 29144 | Chanos chanos | Chanidae | Gonorynchiformes | Chordata | GCF_902362185.1 | 780 | 226800 | 0.3427366200896388 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | fChaCha1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/362/185/GCF_902362185.1_fChaCha1.1 | GCF_902362185.1;PRJNA564626;SAMEA5159473;CABIVN000000000.1;representative genome;29144;29144;Chanos chanos;;;latest;Chromosome;Major;Full;2019/08/14;fChaCha1.1;SC;GCA_902362185.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/362/185/GCF_902362185.1_fChaCha1.1;;;na | 1 |
| 10029 | Cricetulus griseus | Cricetidae | Rodentia | Chordata | GCF_000223135.1 | 619 | 180035 | 0.3426439492067709 | 85.1 | ["u11", "u12", "u4atac", "u6atac"] | CriGri_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/223/135/GCF_000223135.1_CriGri_1.0 | GCF_000223135.1;PRJNA72741;SAMN02981352;AFTD00000000.1;representative genome;10029;10029;Cricetulus griseus;;;latest;Scaffold;Major;Full;2011/08/23;CriGri_1.0;Beijing Genomics Institute;GCA_000223135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/223/135/GCF_000223135.1_CriGri_1.0;;;na | 1 |
| 9696 | Puma concolor | Felidae | Carnivora | Chordata | GCF_003327715.1 | 561 | 163247 | 0.3424741160382887 | 92.2 | ["u11", "u12", "u4atac", "u6atac"] | PumCon1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/327/715/GCF_003327715.1_PumCon1.0 | GCF_003327715.1;PRJNA481988;SAMN08662999;QAVW00000000.1;representative genome;9696;9696;Puma concolor;;SC36_Marlon;latest;Scaffold;Major;Full;2018/07/19;PumCon1.0;Broad Institute;GCA_003327715.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/327/715/GCF_003327715.1_PumCon1.0;;;na | 1 |
| 9901 | Bison bison | Bovidae | Artiodactyla | Chordata | GCF_000754665.1 | 618 | 179895 | 0.3423576141330541 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | Bison_UMD1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/754/665/GCF_000754665.1_Bison_UMD1.0 | GCF_000754665.1;PRJNA266339;SAMN02947321;JPYT00000000.1;representative genome;43346;9901;Bison bison bison;;TAMUID 2011002044;latest;Scaffold;Major;Full;2014/10/08;Bison_UMD1.0;University of Maryland;GCA_000754665.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/754/665/GCF_000754665.1_Bison_UMD1.0;;;na | 1 |
| 186990 | Hipposideros armiger | Hipposideridae | Chiroptera | Chordata | GCF_001890085.1 | 608 | 177011 | 0.3423057217977807 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM189008v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/085/GCF_001890085.1_ASM189008v1 | GCF_001890085.1;PRJNA357596;SAMN03177460;JXIK00000000.1;representative genome;186990;186990;Hipposideros armiger;;ML-2016;latest;Scaffold;Major;Full;2016/12/06;ASM189008v1;SKLEC & IECR;GCA_001890085.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/085/GCF_001890085.1_ASM189008v1;;;na | 1 |
| 72004 | Bos mutus | Bovidae | Artiodactyla | Chordata | GCF_000298355.1 | 624 | 181703 | 0.3422422351050584 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | BosGru_v2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/355/GCF_000298355.1_BosGru_v2.0 | GCF_000298355.1;PRJNA221623;SAMN00744358;AGSK00000000.1;representative genome;72004;72004;Bos mutus;;yakQH1;latest;Scaffold;Major;Full;2013/01/09;BosGru_v2.0;BGI-shenzhen;GCA_000298355.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/355/GCF_000298355.1_BosGru_v2.0;;;na | 1 |
| 491861 | Grammomys surdaster | Muridae | Rodentia | Chordata | GCF_004785775.1 | 644 | 187580 | 0.3421455287317239 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | NIH_TR_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/785/775/GCF_004785775.1_NIH_TR_1.0 | GCF_004785775.1;PRJNA533235;SAMN11172698;SRMG00000000.1;representative genome;491861;491861;Grammomys surdaster;;TR1022;latest;Scaffold;Major;Full;2019/04/12;NIH_TR_1.0;NIH Sequencing Center;GCA_004785775.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/785/775/GCF_004785775.1_NIH_TR_1.0;;;na | 1 |
| 2696672 | Apteryx mantelli | Apterygidae | Apterygiformes | Chordata | GCF_001039765.1 | 519 | 151207 | 0.3420639837601993 | 85.5 | ["u11", "u12", "u6atac"] | AptMant0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/765/GCF_001039765.1_AptMant0 | GCF_001039765.1;PRJNA294519;SAMEA2560515;;representative genome;202946;2696672;Apteryx mantelli mantelli;;;latest;Contig;Major;Full;2015/06/21;AptMant0;MPI-EVA;GCA_001039765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/765/GCF_001039765.1_AptMant0;;;na | 1 |
| 8801 | Struthio camelus | Struthionidae | Struthioniformes | Chordata | GCF_000698965.1 | 518 | 150944 | 0.3419999735907356 | 87.1 | ["u12", "u6atac"] | ASM69896v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/698/965/GCF_000698965.1_ASM69896v1 | GCF_000698965.1;PRJNA263340;SAMN02316164;JJRT00000000.1;representative genome;441894;8801;Struthio camelus australis;;BGI_N308;latest;Scaffold;Major;Full;2014/06/06;ASM69896v1;BGI;GCA_000698965.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/698/965/GCF_000698965.1_ASM69896v1;;;na | 1 |
| 194338 | Athene cunicularia | Strigidae | Strigiformes | Chordata | GCF_003259725.1 | 506 | 147452 | 0.3419889428080942 | 87.1 | ["u12", "u6atac"] | athCun1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/725/GCF_003259725.1_athCun1 | GCF_003259725.1;PRJNA497593;SAMN08961563;QEEU00000000.1;representative genome;194338;194338;Athene cunicularia;;RWA;latest;Scaffold;Major;Full;2018/06/21;athCun1;Stefan Boerno's shared submissions;GCA_003259725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/725/GCF_003259725.1_athCun1;;;na | 1 |
| 114329 | Neopelma chrysocephalum | Pipridae | Passeriformes | Chordata | GCF_003984885.1 | 579 | 168763 | 0.3419116344439064 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | ASM398488v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/984/885/GCF_003984885.1_ASM398488v2 | GCF_003984885.1;PRJNA513341;SAMN08784363;RDMT00000000.1;representative genome;114329;114329;Neopelma chrysocephalum;;;latest;Scaffold;Major;Full;2018/12/28;ASM398488v2;Smithsonian Institution;GCA_003984885.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/984/885/GCF_003984885.1_ASM398488v2;;;na | 1 |
| 28737 | Elephantulus edwardii | Macroscelididae | Macroscelidea | Chordata | GCF_000299155.1 | 606 | 176655 | 0.3418687697801547 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | EleEdw1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/299/155/GCF_000299155.1_EleEdw1.0 | GCF_000299155.1;PRJNA221636;SAMN00749966;AMGZ00000000.1;representative genome;28737;28737;Elephantulus edwardii;;Elephantulus edwardi_28Jun2011;latest;Scaffold;Major;Full;2012/10/10;EleEdw1.0;Broad Institute;GCA_000299155.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/299/155/GCF_000299155.1_EleEdw1.0;;;na | 1 |
| 51337 | Jaculus jaculus | Dipodidae | Rodentia | Chordata | GCF_020740685.1 | 642 | 187195 | 0.3417856971736133 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | mJacJac1.mat.Y.cur | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/740/685/GCF_020740685.1_mJacJac1.mat.Y.cur | GCF_020740685.1;PRJNA778790;SAMN20391724;JAJGSA000000000.1;representative genome;51337;51337;Jaculus jaculus;;mJacJac1;latest;Chromosome;Major;Full;2021/11/04;mJacJac1.mat.Y.cur;Vertebrate Genomes Project;GCA_020740685.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/740/685/GCF_020740685.1_mJacJac1.mat.Y.cur;;;na | 1 |
| 9371 | Echinops telfairi | Tenrecidae | Chordata | GCF_000313985.2 | 593 | 172960 | 0.3416823679221909 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | ASM31398v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/985/GCF_000313985.2_ASM31398v2 | GCF_000313985.2;PRJNA193504;SAMN00216137;AAIY00000000.3;representative genome;9371;9371;Echinops telfairi;;266;latest;Scaffold;Major;Full;2019/07/15;ASM31398v2;Broad Institute;GCA_000313985.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/985/GCF_000313985.2_ASM31398v2;;;na | 1 | |
| 9002 | Centrocercus urophasianus | Phasianidae | Galliformes | Chordata | GCF_019232065.1 | 540 | 157531 | 0.3416186397251868 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | USGS_Curo_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/232/065/GCF_019232065.1_USGS_Curo_1.0 | GCF_019232065.1;PRJNA752107;SAMN20124253;JAHKSY000000000.1;representative genome;9002;9002;Centrocercus urophasianus;;14NV4802_14NV808;latest;Scaffold;Major;Full;2021/07/15;USGS_Curo_1.0;United States Geological Survey;GCA_019232065.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/232/065/GCF_019232065.1_USGS_Curo_1.0;;;na | 1 |
| 8502 | Crocodylus porosus | Crocodylidae | Crocodylia | Chordata | GCF_001723895.1 | 552 | 161044 | 0.3415926136785563 | 91.8 | ["u11", "u12", "u4atac", "u6atac"] | CroPor_comp1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/895/GCF_001723895.1_CroPor_comp1 | GCF_001723895.1;PRJNA357059;SAMN03102602;MDVP00000000.1;representative genome;8502;8502;Crocodylus porosus;;Cpor-Errol;latest;Scaffold;Major;Full;2016/09/13;CroPor_comp1;Mississippi State University;GCA_001723895.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/895/GCF_001723895.1_CroPor_comp1;;;na | 1 |
| 10160 | Octodon degus | Octodontidae | Rodentia | Chordata | GCF_000260255.1 | 640 | 186765 | 0.3415063632240335 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | OctDeg1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/255/GCF_000260255.1_OctDeg1.0 | GCF_000260255.1;PRJNA193441;SAMN00769067;AJSA00000000.1;representative genome;10160;10160;Octodon degus;;3935;latest;Scaffold;Major;Full;2012/05/01;OctDeg1.0;Broad Institute;GCA_000260255.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/255/GCF_000260255.1_OctDeg1.0;;;na | 1 |
| 9644 | Ursus arctos | Ursidae | Carnivora | Chordata | GCF_003584765.2 | 648 | 189147 | 0.3414210068758397 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM358476v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/584/765/GCF_003584765.2_ASM358476v2 | GCF_003584765.2;PRJNA493656;SAMN09907428;QXTK00000000.1;representative genome;116960;9644;Ursus arctos horribilis;;GAN/ISIS:MIG12-29695490/34125;latest;Scaffold;Minor;Full;2018/09/20;ASM358476v2;Canada's Genomic Enterprise;GCA_003584765.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/584/765/GCF_003584765.2_ASM358476v2;;;na | 1 |
| 9233 | Aptenodytes forsteri | Spheniscidae | Sphenisciformes | Chordata | GCF_000699145.1 | 508 | 148283 | 0.341418499774852 | 88.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM69914v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/145/GCF_000699145.1_ASM69914v1 | GCF_000699145.1;PRJNA261081;SAMN02596600;JMFQ00000000.1;representative genome;9233;9233;Aptenodytes forsteri;;BGI_AS27;latest;Scaffold;Major;Full;2014/06/06;ASM69914v1;BGI;GCA_000699145.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/145/GCF_000699145.1_ASM69914v1;;;na | 1 |
| 29078 | Eptesicus fuscus | Vespertilionidae | Chiroptera | Chordata | GCF_000308155.1 | 619 | 180761 | 0.3412724666446135 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | EptFus1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/155/GCF_000308155.1_EptFus1.0 | GCF_000308155.1;PRJNA232522;SAMN00767986;ALEH00000000.1;representative genome;29078;29078;Eptesicus fuscus;;BU_THK_EF1;latest;Scaffold;Major;Full;2012/11/08;EptFus1.0;Broad Institute;GCA_000308155.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/308/155/GCF_000308155.1_EptFus1.0;;;na | 1 |
| 94835 | Gavialis gangeticus | Gavialidae | Crocodylia | Chordata | GCF_001723915.1 | 534 | 155995 | 0.3411508410582065 | 89.8 | ["u11", "u12", "u4atac", "u6atac"] | GavGan_comp1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/915/GCF_001723915.1_GavGan_comp1 | GCF_001723915.1;PRJNA357062;SAMN03102901;MDVQ00000000.1;representative genome;94835;94835;Gavialis gangeticus;;Ggan-Ray;latest;Scaffold;Major;Full;2016/09/13;GavGan_comp1;The International Crocodilian Genomes Working Group;GCA_001723915.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/915/GCF_001723915.1_GavGan_comp1;;;na | 1 |
| 8868 | Cygnus atratus | Anatidae | Anseriformes | Chordata | GCF_013377495.1 | 563 | 164570 | 0.3409373050813586 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | Cygnus_atratus_primary_v1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/377/495/GCF_013377495.1_Cygnus_atratus_primary_v1.0 | GCF_013377495.1;PRJNA646059;SAMN15332785;JABXOC000000000.1;representative genome;8868;8868;Cygnus atratus;ecotype=Queensland, Australia;AKBS03;latest;Contig;Major;Full;2020/06/30;Cygnus_atratus_primary_v1.0;The University of Queensland;GCA_013377495.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/377/495/GCF_013377495.1_Cygnus_atratus_primary_v1.0;;;na | 1 |
| 30522 | Bos indicus x bos taurus | Bovidae | Artiodactyla | Chordata | GCF_003369695.1 | 670 | 195866 | 0.3409044653396833 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | UOA_Brahman_1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/369/695/GCF_003369695.1_UOA_Brahman_1 | GCF_003369695.1;PRJNA508959;SAMN08473802;PUFS00000000.2;representative genome;30522;30522;Bos indicus x Bos taurus;breed=Angus x Brahman F1 hybrid;;latest;Chromosome;Major;Full;2018/11/30;UOA_Brahman_1;University of Adelaide;GCA_003369695.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/369/695/GCF_003369695.1_UOA_Brahman_1;;;na | 1 |
| 9807 | Ceratotherium simum | Rhinocerotidae | Perissodactyla | Chordata | GCF_000283155.1 | 631 | 184619 | 0.3406207827260459 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | CerSimSim1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/283/155/GCF_000283155.1_CerSimSim1.0 | GCF_000283155.1;PRJNA191537;SAMN00778988;AKZM00000000.1;representative genome;73337;9807;Ceratotherium simum simum;;SDZICR_KB13650;latest;Scaffold;Major;Full;2012/07/31;CerSimSim1.0;Broad Institute;GCA_000283155.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/283/155/GCF_000283155.1_CerSimSim1.0;;;na | 1 |
| 9978 | Ochotona princeps | Ochotonidae | Lagomorpha | Chordata | GCF_014633375.1 | 573 | 167655 | 0.3406091732648548 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | OchPri4.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/633/375/GCF_014633375.1_OchPri4.0 | GCF_014633375.1;PRJNA666703;SAMN15664588;JACJUE000000000.1;representative genome;9978;9978;Ochotona princeps;;UAM:Mamm:113957;latest;Chromosome;Major;Full;2020/09/21;OchPri4.0;University of British Columbia Okanagan;GCA_014633375.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/633/375/GCF_014633375.1_OchPri4.0;;;na | 1 |
| 9785 | Loxodonta africana | Elephantidae | Proboscidea | Chordata | GCF_000001905.1 | 604 | 176726 | 0.3406079061636496 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | Loxafr3.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/905/GCF_000001905.1_Loxafr3.0 | GCF_000001905.1;PRJNA70973;SAMN02953622;AAGU00000000.3;representative genome;9785;9785;Loxodonta africana;;ISIS603380;latest;Scaffold;Major;Full;2009/07/15;Loxafr3.0;Broad Institute;GCA_000001905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/905/GCF_000001905.1_Loxafr3.0;;;na | 1 |
| 34884 | Callorhinus ursinus | Otariidae | Carnivora | Chordata | GCF_003265705.1 | 709 | 207474 | 0.3405657522468213 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM326570v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/265/705/GCF_003265705.1_ASM326570v1 | GCF_003265705.1;PRJNA481736;SAMN09379881;QLOG00000000.1;representative genome;34884;34884;Callorhinus ursinus;;GAN/ISIS: 27379988/994484;latest;Scaffold;Major;Full;2018/06/26;ASM326570v1;Canada's Genomics Enterprise;GCA_003265705.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/265/705/GCF_003265705.1_ASM326570v1;;;na | 1 |
| 9913 | Bos taurus | Bovidae | Artiodactyla | Chordata | GCF_002263795.1 | 675 | 197636 | 0.3403744623344141 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | ARS-UCD1.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/263/795/GCF_002263795.1_ARS-UCD1.2 | GCF_002263795.1;PRJNA450837;SAMN03145444;NKLS00000000.2;representative genome;9913;9913;Bos taurus;breed=Hereford;L1 Dominette 01449 registration number 42190680;latest;Chromosome;Major;Full;2018/04/11;ARS-UCD1.2;USDA ARS;GCA_002263795.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/263/795/GCF_002263795.1_ARS-UCD1.2;;;na | 1 |
| 452646 | Neogale vison | Mustelidae | Carnivora | Chordata | GCF_020171115.1 | 646 | 189244 | 0.3401969561324978 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | ASM_NN_V1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/171/115/GCF_020171115.1_ASM_NN_V1 | GCF_020171115.1;PRJNA769404;SAMN19764019;JAIAWX000000000.1;representative genome;452646;452646;Neogale vison;;M4711;latest;Chromosome;Major;Full;2021/09/29;ASM_NN_V1;Dalhousie University;GCA_020171115.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/171/115/GCF_020171115.1_ASM_NN_V1;;;na | 1 |
| 9771 | Balaenoptera musculus | Balaenopteridae | Artiodactyla | Chordata | GCF_009873245.2 | 631 | 184926 | 0.3400572330874071 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | mBalMus1.pri.v3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/873/245/GCF_009873245.2_mBalMus1.pri.v3 | GCF_009873245.2;PRJNA607322;SAMN12287136;VNFC00000000.3;representative genome;9771;9771;Balaenoptera musculus;;JJ_BM4_2016_0621;latest;Chromosome;Major;Full;2020/10/02;mBalMus1.pri.v3;G10K;GCA_009873245.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/873/245/GCF_009873245.2_mBalMus1.pri.v3;;;na | 1 |
| 7918 | Lepisosteus oculatus | Lepisosteidae | Semionotiformes | Chordata | GCF_000242695.1 | 632 | 185220 | 0.340055528054581 | 94.5 | ["u11", "u12", "u4atac", "u6atac"] | LepOcu1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/242/695/GCF_000242695.1_LepOcu1 | GCF_000242695.1;PRJNA221149;SAMN00706774;AHAT00000000.1;representative genome;7918;7918;Lepisosteus oculatus;;Spotted Gar 1;latest;Chromosome;Major;Full;2012/01/13;LepOcu1;Broad Institute;GCA_000242695.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/242/695/GCF_000242695.1_LepOcu1;;;na | 1 |
| 225400 | Myotis davidii | Vespertilionidae | Chiroptera | Chordata | GCF_000327345.1 | 594 | 174103 | 0.3400172870741913 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM32734v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/327/345/GCF_000327345.1_ASM32734v1 | GCF_000327345.1;PRJNA232515;SAMN01103204;ALWT00000000.1;representative genome;225400;225400;Myotis davidii;;;latest;Scaffold;Major;Full;2012/12/20;ASM32734v1;BGI;GCA_000327345.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/327/345/GCF_000327345.1_ASM32734v1;;;na | 1 |
| 105255 | Dipodomys spectabilis | Heteromyidae | Rodentia | Chordata | GCF_019054845.1 | 639 | 187339 | 0.339933396461288 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM1905484v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/054/845/GCF_019054845.1_ASM1905484v1 | GCF_019054845.1;PRJNA748106;SAMN19232064;JAHHPX000000000.1;representative genome;105255;105255;Dipodomys spectabilis;;Male_0828;latest;Contig;Major;Full;2021/06/29;ASM1905484v1;Auburn University;GCA_019054845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/054/845/GCF_019054845.1_ASM1905484v1;;;na | 1 |
| 9749 | Delphinapterus leucas | Monodontidae | Artiodactyla | Chordata | GCF_002288925.2 | 633 | 185582 | 0.3399296512096233 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM228892v3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/288/925/GCF_002288925.2_ASM228892v3 | GCF_002288925.2;PRJNA407951;SAMN06216270;NQVZ00000000.2;representative genome;9749;9749;Delphinapterus leucas;;GAN/ISIS: 26980492/103006;latest;Scaffold;Major;Full;2019/08/29;ASM228892v3;BC Cancer Agency;GCA_002288925.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/288/925/GCF_002288925.2_ASM228892v3;;;na | 1 |
| 38674 | Onychomys torridus | Cricetidae | Rodentia | Chordata | GCF_903995425.1 | 639 | 187347 | 0.339918930133095 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | mOncTor1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/995/425/GCF_903995425.1_mOncTor1.1 | GCF_903995425.1;PRJNA664182;SAMEA104026389;CAJFAA000000000.1;representative genome;38674;38674;Onychomys torridus;;;latest;Chromosome;Major;Full;2020/08/21;mOncTor1.1;SC;GCA_903995425.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/995/425/GCF_903995425.1_mOncTor1.1;;;na | 1 |
| 7668 | Strongylocentrotus purpuratus | Strongylocentrotidae | Camarodonta | Echinodermata | GCF_000002235.5 | 727 | 213410 | 0.3395022812498541 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | Spur_5.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/235/GCF_000002235.5_Spur_5.0 | GCF_000002235.5;PRJNA13728;SAMN00829422;AAGJ00000000.6;representative genome;7668;7668;Strongylocentrotus purpuratus;;Spur 01;latest;Scaffold;Major;Full;2019/09/06;Spur_5.0;Baylor College of Medicine;GCA_000002235.4;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/235/GCF_000002235.5_Spur_5.0;;;na | 1 |
| 48420 | Gulo gulo | Mustelidae | Carnivora | Chordata | GCA_900006375.2 | 497 | 145947 | 0.3393788752014422 | 78.0 | ["u11", "u12", "u4atac", "u6atac"] | Gulo_2.2_annotated | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/006/375/GCA_900006375.2_Gulo_2.2_annotated | GCA_900006375.2;PRJEB10674;SAMEA3522159;CYRY00000000.2;representative genome;48420;48420;Gulo gulo;;;latest;Scaffold;Major;Full;2018/12/06;Gulo_2.2_annotated;Uppsala University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/006/375/GCA_900006375.2_Gulo_2.2_annotated;;;na | 1 |
| 379532 | Propithecus coquereli | Indriidae | Primates | Chordata | GCF_000956105.1 | 577 | 169469 | 0.3393199487197582 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | Pcoq_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/956/105/GCF_000956105.1_Pcoq_1.0 | GCF_000956105.1;PRJNA281642;SAMN03121823;JZKE00000000.1;representative genome;379532;379532;Propithecus coquereli;;6110/MARCELLA;latest;Scaffold;Major;Full;2015/03/23;Pcoq_1.0;Baylor College of Medicine;GCA_000956105.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/956/105/GCF_000956105.1_Pcoq_1.0;;;na | 1 |
| 61383 | Lynx canadensis | Felidae | Carnivora | Chordata | GCF_007474595.2 | 637 | 187094 | 0.3393152968875678 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | mLynCan4.pri.v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/474/595/GCF_007474595.2_mLynCan4.pri.v2 | GCF_007474595.2;PRJNA558991;SAMN09948483;VHLE00000000.2;representative genome;61383;61383;Lynx canadensis;;LIC74;latest;Chromosome;Major;Full;2020/07/14;mLynCan4.pri.v2;Vertebrate Genomes Project;GCA_007474595.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/474/595/GCF_007474595.2_mLynCan4.pri.v2;;;na | 1 |
| 10224 | Saccoglossus kowalevskii | Harrimaniidae | Hemichordata | GCF_000003605.2 | 485 | 142451 | 0.3393126993899367 | 86.3 | ["u11", "u12", "u4atac", "u6atac"] | Skow_1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/605/GCF_000003605.2_Skow_1.1 | GCF_000003605.2;PRJNA42857;SAMN00102747;ACQM00000000.1;representative genome;10224;10224;Saccoglossus kowalevskii;;;latest;Scaffold;Major;Full;2009/09/09;Skow_1.1;Baylor College of Medicine;GCA_000003605.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/605/GCF_000003605.2_Skow_1.1;;;na | 1 | |
| 1754191 | Piromyces finnis | Neocallimastigaceae | Neocallimastigales | Chytridiomycota | GCA_002104945.1 | 147 | 43177 | 0.3393038500600129 | 88.2 | ["u12", "u4atac", "u6atac"] | Piromyces sp. finnis v3.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/945/GCA_002104945.1_Piromyces_sp._finnis_v3.0 | GCA_002104945.1;PRJNA330696;SAMN05421903;MCFH00000000.1;representative genome;1754191;1754191;Piromyces finnis;strain=finn;;latest;Contig;Major;Full;2017/04/20;Piromyces sp. finnis v3.0;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/945/GCA_002104945.1_Piromyces_sp._finnis_v3.0;;assembly from type material;na | 1 |
| 321398 | Lepidothrix coronata | Pipridae | Passeriformes | Chordata | GCF_001604755.1 | 554 | 162800 | 0.3391407617811623 | 94.9 | ["u12", "u4atac", "u6atac"] | Lepidothrix_coronata-1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/604/755/GCF_001604755.1_Lepidothrix_coronata-1.0 | GCF_001604755.1;PRJNA338288;SAMN04274560;LVWP00000000.1;representative genome;321398;321398;Lepidothrix coronata;;B3197;latest;Scaffold;Major;Full;2016/03/31;Lepidothrix_coronata-1.0;McDonnell Genome Institute;GCA_001604755.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/604/755/GCF_001604755.1_Lepidothrix_coronata-1.0;;;na | 1 |
| 7913 | Polyodon spathula | Polyodontidae | Acipenseriformes | Chordata | GCF_017654505.1 | 1047 | 307715 | 0.3390961322960727 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | ASM1765450v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/654/505/GCF_017654505.1_ASM1765450v1 | GCF_017654505.1;PRJNA726223;SAMN09842169;JADDYA000000000.1;representative genome;7913;7913;Polyodon spathula;;WHYD16114869_AA;latest;Chromosome;Major;Full;2021/03/31;ASM1765450v1;Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences;GCA_017654505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/654/505/GCF_017654505.1_ASM1765450v1;;;na | 1 |
| 8520 | Sceloporus undulatus | Phrynosomatidae | Squamata | Chordata | GCF_019175285.1 | 643 | 189165 | 0.338763381943859 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | SceUnd_v1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/175/285/GCF_019175285.1_SceUnd_v1.1 | GCF_019175285.1;PRJNA746303;SAMN14373011;JAGXEY000000000.1;representative genome;8520;8520;Sceloporus undulatus;ecotype=Alabama;JIND9_A2432;latest;Chromosome;Major;Full;2021/07/08;SceUnd_v1.1;Auburn University;GCA_019175285.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/175/285/GCF_019175285.1_SceUnd_v1.1;;;na | 1 |
| 9261 | Tachyglossus aculeatus | Tachyglossidae | Monotremata | Chordata | GCF_015852505.1 | 633 | 186297 | 0.3386294334777724 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | mTacAcu1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/852/505/GCF_015852505.1_mTacAcu1.pri | GCF_015852505.1;PRJNA687514;SAMN12634963;JADRJE000000000.1;representative genome;9261;9261;Tachyglossus aculeatus;;mTacAcu1;latest;Chromosome;Major;Full;2020/12/09;mTacAcu1.pri;Vertebrate Genomes Project;GCA_015852505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/852/505/GCF_015852505.1_mTacAcu1.pri;;;na | 1 |
| 1026970 | Nannospalax galili | Spalacidae | Rodentia | Chordata | GCF_000622305.1 | 638 | 187813 | 0.3385495433826299 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | S.galili_v1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/622/305/GCF_000622305.1_S.galili_v1.0 | GCF_000622305.1;PRJNA254049;SAMN02299330;AXCS00000000.1;representative genome;1026970;1026970;Nannospalax galili;;Female #2095;latest;Scaffold;Major;Full;2014/06/05;S.galili_v1.0;BGI;GCA_000622305.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/622/305/GCF_000622305.1_S.galili_v1.0;;;na | 1 |
| 45807 | Motacilla alba | Motacillidae | Passeriformes | Chordata | GCF_015832195.1 | 550 | 161966 | 0.3384282162987029 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | Motacilla_alba_V1.0_pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/832/195/GCF_015832195.1_Motacilla_alba_V1.0_pri | GCF_015832195.1;PRJNA684358;SAMN16093224;JACXWE000000000.1;representative genome;1094192;45807;Motacilla alba alba;;MOTALB_02;latest;Chromosome;Major;Full;2020/12/08;Motacilla_alba_V1.0_pri;Uppsala University;GCA_015832195.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/832/195/GCF_015832195.1_Motacilla_alba_V1.0_pri;;;na | 1 |
| 41447 | Seriola dumerili | Carangidae | Carangiformes | Chordata | GCF_002260705.1 | 756 | 222721 | 0.3382898463824018 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | Sdu_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/260/705/GCF_002260705.1_Sdu_1.0 | GCF_002260705.1;PRJNA412910;SAMD00083043;BDQW00000000.1;representative genome;41447;41447;Seriola dumerili;;Sdu_G_001;latest;Scaffold;Major;Full;2017/08/03;Sdu_1.0;Genomic breeding group, Research Center for Aquatic Breeding, National Research Institute of aquaculture, FRA;GCA_002260705.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/260/705/GCF_002260705.1_Sdu_1.0;;;na | 1 |
| 296741 | Chiroxiphia lanceolata | Pipridae | Passeriformes | Chordata | GCF_009829145.1 | 582 | 171517 | 0.3381774443779453 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | bChiLan1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/829/145/GCF_009829145.1_bChiLan1.pri | GCF_009829145.1;PRJNA603801;SAMN12620979;WNMC00000000.1;representative genome;296741;296741;Chiroxiphia lanceolata;;bChiLan1;latest;Chromosome;Major;Full;2020/01/03;bChiLan1.pri;Vertebrate Genomes Project;GCA_009829145.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/829/145/GCF_009829145.1_bChiLan1.pri;;;na | 1 |
| 7906 | Acipenser ruthenus | Acipenseridae | Acipenseriformes | Chordata | GCF_010645085.1 | 1208 | 356026 | 0.3381537031749497 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM1064508v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/645/085/GCF_010645085.1_ASM1064508v1 | GCF_010645085.1;PRJNA635364;SAMN12612932;VTUV00000000.1;representative genome;7906;7906;Acipenser ruthenus;;Gen_M01;latest;Chromosome;Major;Full;2020/02/19;ASM1064508v1;University of Wuerzburg;GCA_010645085.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/645/085/GCF_010645085.1_ASM1064508v1;;;na | 1 |
| 9993 | Marmota marmota | Sciuridae | Rodentia | Chordata | GCF_001458135.1 | 605 | 178367 | 0.3380417048476857 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | marMar2.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/458/135/GCF_001458135.1_marMar2.1 | GCF_001458135.1;PRJNA298354;SAMEA3214822;CZRN00000000.1;representative genome;9994;9993;Marmota marmota marmota;;;latest;Scaffold;Major;Full;2015/11/20;marMar2.1;MRC NATIONAL INSTITUTE FOR MEDICAL RESEARCH;GCA_001458135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/458/135/GCF_001458135.1_marMar2.1;;;na | 1 |
| 80966 | Acanthochromis polyacanthus | Pomacentridae | Chordata | GCF_002109545.1 | 766 | 225948 | 0.3378706211349983 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | ASM210954v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/109/545/GCF_002109545.1_ASM210954v1 | GCF_002109545.1;PRJNA396896;SAMN06347167;MVNR00000000.1;representative genome;80966;80966;Acanthochromis polyacanthus;ecotype=Palm Islands;;latest;Scaffold;Major;Full;2017/04/25;ASM210954v1;King Abdullah University of Science and technology;GCA_002109545.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/109/545/GCF_002109545.1_ASM210954v1;;;na | 1 | |
| 33562 | Dromiciops gliroides | Microbiotheriidae | Microbiotheria | Chordata | GCF_019393635.1 | 651 | 192055 | 0.3378203065810094 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | mDroGli1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/393/635/GCF_019393635.1_mDroGli1.pri | GCF_019393635.1;PRJNA764759;SAMN18857598;JAHYBR000000000.1;representative genome;33562;33562;Dromiciops gliroides;;mDroGli1;latest;Chromosome;Major;Full;2021/08/03;mDroGli1.pri;Vertebrate Genomes Project;GCA_019393635.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/393/635/GCF_019393635.1_mDroGli1.pri;;;na | 1 |
| 7574 | Lingula anatina | Lingulidae | Lingulida | Brachiopoda | GCF_001039355.2 | 731 | 215696 | 0.3377582279475297 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | LinAna2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/355/GCF_001039355.2_LinAna2.0 | GCF_001039355.2;PRJNA293030;SAMN03770811;LFEI00000000.2;representative genome;7574;7574;Lingula anatina;;Amm_Jpn;latest;Scaffold;Major;Full;2018/01/26;LinAna2.0;Okinawa Institute of Science and Technology Graduate University (OIST);GCA_001039355.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/355/GCF_001039355.2_LinAna2.0;;;na | 1 |
| 10089 | Mus caroli | Muridae | Rodentia | Chordata | GCF_900094665.1 | 647 | 190912 | 0.3377549475618477 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | CAROLI_EIJ_v1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/665/GCF_900094665.1_CAROLI_EIJ_v1.1 | GCF_900094665.1;PRJNA387030;SAMEA3367631;FMAL00000000.2;representative genome;10089;10089;Mus caroli;;;latest;Chromosome;Major;Full;2017/04/28;CAROLI_EIJ_v1.1;EBI;GCA_900094665.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/665/GCF_900094665.1_CAROLI_EIJ_v1.1;;;na | 1 |
| 8103 | Cyclopterus lumpus | Cyclopteridae | Perciformes | Chordata | GCF_009769545.1 | 740 | 218399 | 0.3376852134946312 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | fCycLum1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/545/GCF_009769545.1_fCycLum1.pri | GCF_009769545.1;PRJNA625538;SAMN12629502;WNNC00000000.1;representative genome;8103;8103;Cyclopterus lumpus;;fCycLum1;latest;Chromosome;Major;Full;2019/12/23;fCycLum1.pri;Vertebrate Genomes Project;GCA_009769545.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/545/GCF_009769545.1_fCycLum1.pri;;;na | 1 |
| 59894 | Ficedula albicollis | Muscicapidae | Passeriformes | Chordata | GCF_000247815.1 | 536 | 158228 | 0.337608021969716 | 91.4 | ["u11", "u12", "u4atac", "u6atac"] | FicAlb1.5 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/815/GCF_000247815.1_FicAlb1.5 | GCF_000247815.1;PRJNA208061;SAMN02981387;AGTO00000000.2;representative genome;59894;59894;Ficedula albicollis;;OC2;latest;Chromosome;Major;Full;2013/06/27;FicAlb1.5;Uppsala University;GCA_000247815.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/815/GCF_000247815.1_FicAlb1.5;;;na | 1 |
| 109478 | Myotis brandtii | Vespertilionidae | Chiroptera | Chordata | GCF_000412655.1 | 619 | 182829 | 0.3374253194365705 | 95.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM41265v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/412/655/GCF_000412655.1_ASM41265v1 | GCF_000412655.1;PRJNA218631;SAMN01801565;ANKR00000000.1;representative genome;109478;109478;Myotis brandtii;;;latest;Scaffold;Major;Full;2013/06/28;ASM41265v1;BGI;GCA_000412655.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/412/655/GCF_000412655.1_ASM41265v1;;;na | 1 |
| 130825 | Ochotona curzoniae | Ochotonidae | Lagomorpha | Chordata | GCF_017591425.1 | 658 | 194363 | 0.3373995620984407 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | NIBS_Ocur_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/591/425/GCF_017591425.1_NIBS_Ocur_1.0 | GCF_017591425.1;PRJNA722036;SAMN13876228;JAADBW000000000.1;representative genome;130825;130825;Ochotona curzoniae;;NIBS_2020;latest;Scaffold;Major;Full;2021/03/26;NIBS_Ocur_1.0;National Institute of Biological Sciences, Beijing;GCA_017591425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/591/425/GCF_017591425.1_NIBS_Ocur_1.0;;;na | 1 |
| 386614 | Amblyraja radiata | Rajidae | Rajiformes | Chordata | GCF_010909765.2 | 632 | 186705 | 0.3373599449121102 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | sAmbRad1.1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/909/765/GCF_010909765.2_sAmbRad1.1.pri | GCF_010909765.2;PRJNA610638;SAMN09948523;JAAGWR000000000.1;representative genome;386614;386614;Amblyraja radiata;;CabotCenter1;latest;Chromosome;Minor;Full;2020/02/21;sAmbRad1.1.pri;Vertebrate Genomes Project;GCA_010909765.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/909/765/GCF_010909765.2_sAmbRad1.1.pri;;;na | 1 |
| 9739 | Tursiops truncatus | Delphinidae | Artiodactyla | Chordata | GCF_011762595.1 | 630 | 186118 | 0.3373530104740078 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | mTurTru1.mat.Y | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/595/GCF_011762595.1_mTurTru1.mat.Y | GCF_011762595.1;PRJNA625792;SAMN12326775;JAAOMD000000000.1;representative genome;9739;9739;Tursiops truncatus;;mTurTru1;latest;Chromosome;Major;Full;2020/03/27;mTurTru1.mat.Y;Vertebrate Genomes Project;GCA_011762595.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/595/GCF_011762595.1_mTurTru1.mat.Y;;;na | 1 |
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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
"species" TEXT,
"family" TEXT,
"order" TEXT,
"phylum" TEXT,
"accession" TEXT,
"n_minor_introns" INTEGER,
"n_major_introns" INTEGER,
"percent_minor_introns" REAL,
"busco_score" REAL,
"minor_snRNAs" TEXT,
"genome_version" TEXT,
"source_url" TEXT,
"source_metadata" TEXT,
"minor_intron+" INTEGER
,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
ON [genomes] ([family]);