genomes
Data license: ODbL · Data source: Larue & Roy, 2023
- taxonomy_id
- INTEGER (primary key), unique identifier for each species
- species
- TEXT, binomial name of the species
- family
- TEXT, taxonomic family of the species
- order
- TEXT, taxonomic order of the species
- phylum
- TEXT, taxonomic phylum of the species
- accession
- TEXT, accession number of the genome assembly
- n_minor_introns
- INTEGER, total number of minor introns in the genome
- n_major_introns
- INTEGER, total number of major introns in the genome
- percent_minor_introns
- REAL, percentage of minor introns in the genome
- busco_score
- REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
- minor_snRNAs
- TEXT, minor snRNAs found in the annotated transcriptome
- genome_version
- TEXT, version of the genome assembly
- source_url
- TEXT, URL for the source genome/annotation files
- source_metadata
- TEXT, additional metadata from the original data source
- minor_intron+
- INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)
1,575 rows sorted by percent_minor_introns descending
This data as json, CSV (advanced)
Suggested facets: phylum, minor_snRNAs
taxonomy_id | species | family | order | phylum | accession | n_minor_introns | n_major_introns | percent_minor_introns ▲ | busco_score | minor_snRNAs | genome_version | source_url | source_metadata | minor_intron+ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5791 | Physarum polycephalum | Physaraceae | Physariida | Evosea | GCA_000413255.3 | 20295 | 159710 | 11.27468681425516 | 66.3 | ["u11", "u12", "u6atac"] | Physarum_polycephalum-10.0 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0 | GCA_000413255.3;PRJNA12851;SAMN02839457;ATCM00000000.3;representative genome;5791;5791;Physarum polycephalum;strain=LU352;;latest;Scaffold;Major;Full;2014/06/30;Physarum_polycephalum-10.0;WUGSC;na;na;ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0;;;na | 1 |
944036 | Blastocystis sp. subtype 1 | Blastocystidae | Opalinata | GCA_001651215.1 | 253 | 35751 | 0.7026997000333296 | 66.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM165121v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1 | GCA_001651215.1;PRJNA308101;SAMN04386717;LXWW00000000.1;representative genome;478820;944036;Blastocystis sp. ATCC 50177/Nand II;strain=NandII;;latest;Scaffold;Major;Full;2016/05/24;ASM165121v1;Dalhousie University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1;;;na | 1 | |
423460 | Basidiobolus meristosporus | Basidiobolaceae | Basidiobolales | Zoopagomycota | GCA_002104905.1 | 249 | 44710 | 0.5538379412353477 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | Basme2finSC | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC | GCA_002104905.1;PRJNA196075;SAMN02745972;MCFE00000000.1;representative genome;1314790;423460;Basidiobolus meristosporus CBS 931.73;strain=CBS 931.73;;latest;Contig;Major;Full;2017/04/20;Basme2finSC;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC;;;na | 1 |
46731 | Pocillopora damicornis | Pocilloporidae | Scleractinia | Cnidaria | GCF_003704095.1 | 633 | 144761 | 0.4353687222306284 | 88.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM370409v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1 | GCF_003704095.1;PRJNA506040;SAMN09007954;RCHS00000000.1;representative genome;46731;46731;Pocillopora damicornis;;RSMAS;latest;Scaffold;Major;Full;2018/10/31;ASM370409v1;University of Miami;GCA_003704095.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1;;;na | 1 |
48498 | Orbicella faveolata | Merulinidae | Scleractinia | Cnidaria | GCF_002042975.1 | 658 | 153770 | 0.4260885331675602 | 87.1 | ["u11", "u12", "u4atac", "u6atac"] | ofav_dov_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1 | GCF_002042975.1;PRJNA381078;SAMN06562666;MZGG00000000.1;representative genome;48498;48498;Orbicella faveolata;;FL;latest;Scaffold;Major;Full;2017/03/20;ofav_dov_v1;Smithsonian Tropical Research Institute;GCA_002042975.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1;;;na | 1 |
37653 | Octopus bimaculoides | Octopodidae | Octopoda | Mollusca | GCF_001194135.1 | 505 | 118177 | 0.4255068165349421 | 92.2 | ["u11", "u12", "u4atac", "u6atac"] | Octopus_bimaculoides_v2_0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0 | GCF_001194135.1;PRJNA305125;SAMN03271701;LGKD00000000.1;representative genome;37653;37653;Octopus bimaculoides;;UCB-OBI-ISO-001;latest;Scaffold;Major;Full;2015/08/18;Octopus_bimaculoides_v2_0;Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley;GCA_001194135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0;;;na | 1 |
7604 | Asterias rubens | Asteriidae | Forcipulatida | Echinodermata | GCF_902459465.1 | 605 | 144606 | 0.4166351034012574 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | eAstRub1.3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3 | GCF_902459465.1;PRJNA626669;SAMEA994741;CABPRM000000000.3;representative genome;7604;7604;Asterias rubens;;;latest;Chromosome;Major;Full;2020/02/12;eAstRub1.3;SC;GCA_902459465.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3;;;na | 1 |
45351 | Nematostella vectensis | Edwardsiidae | Actiniaria | Cnidaria | GCF_000209225.1 | 682 | 163077 | 0.4164656599026618 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM20922v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1 | GCF_000209225.1;PRJNA19965;SAMN02953687;ABAV00000000.1;representative genome;45351;45351;Nematostella vectensis;strain=CH2 x CH6;;latest;Scaffold;Major;Full;2007/08/22;ASM20922v1;DOE Joint Genome Institute (JGI);GCA_000209225.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1;;;na | 1 |
6105 | Actinia tenebrosa | Actiniidae | Actiniaria | Cnidaria | GCF_009602425.1 | 609 | 146062 | 0.4152150050112156 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM960242v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1 | GCF_009602425.1;PRJNA590223;SAMN10439458;WAHB00000000.1;representative genome;6105;6105;Actinia tenebrosa;;;latest;Scaffold;Major;Full;2019/11/06;ASM960242v1;QUT;GCA_009602425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1;;;na | 1 |
2652724 | Exaiptasia diaphana | Aiptasiidae | Actiniaria | Cnidaria | GCF_001417965.1 | 590 | 142729 | 0.4116690738841326 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | Aiptasia genome 1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1 | GCF_001417965.1;PRJNA386175;SAMN03839803;LJWW00000000.1;representative genome;2652724;2652724;Exaiptasia diaphana;;CC7;latest;Scaffold;Major;Full;2015/10/28;Aiptasia genome 1.1;KAUST;GCA_001417965.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1;;;na | 1 |
9915 | Bos indicus | Bovidae | Artiodactyla | Chordata | GCF_000247795.1 | 688 | 171989 | 0.398431754084215 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | Bos_indicus_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0 | GCF_000247795.1;PRJNA360096;SAMN02953802;AGFL00000000.1;representative genome;9915;9915;Bos indicus;breed=Nelore;QUIL7308;latest;Chromosome;Major;Full;2014/11/25;Bos_indicus_1.0;Genoa Biotecnologia SA ;GCA_000247795.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0;;;na | 1 |
133434 | Acanthaster planci | Acanthasteridae | Valvatida | Echinodermata | GCF_001949145.1 | 602 | 151442 | 0.3959380179421746 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | OKI-Apl_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0 | GCF_001949145.1;PRJNA397419;SAMD00054104;BDGF00000000.1;representative genome;133434;133434;Acanthaster planci;;;latest;Scaffold;Major;Full;2016/12/20;OKI-Apl_1.0;Okinawa Institute of Science and Technology;GCA_001949145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0;;;na | 1 |
50429 | Stylophora pistillata | Pocilloporidae | Scleractinia | Cnidaria | GCF_002571385.1 | 637 | 165556 | 0.383289308213944 | 90.6 | ["u11", "u12", "u4atac", "u6atac"] | Stylophora pistillata v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1 | GCF_002571385.1;PRJNA415215;SAMN03491624;LSMT00000000.1;representative genome;50429;50429;Stylophora pistillata;;CSM Monaco;latest;Scaffold;Major;Full;2017/10/17;Stylophora pistillata v1;KAUST;GCA_002571385.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1;;;na | 1 |
187382 | Chlamydotis macqueenii | Otididae | Gruiformes | Chordata | GCF_000695195.1 | 433 | 112937 | 0.381935256240628 | 60.0 | ["u12", "u6atac"] | ASM69519v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1 | GCF_000695195.1;PRJNA266006;SAMN02324157;JMFJ00000000.1;representative genome;187382;187382;Chlamydotis macqueenii;;BGI_N324;latest;Scaffold;Major;Full;2014/06/02;ASM69519v1;BGI;GCA_000695195.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1;;;na | 1 |
36300 | Pelecanus crispus | Pelecanidae | Pelecaniformes | Chordata | GCF_000687375.1 | 436 | 114858 | 0.3781636511873991 | 59.2 | ["u11", "u6atac"] | ASM68737v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1 | GCF_000687375.1;PRJNA253833;SAMN02339887;JJRG00000000.1;representative genome;36300;36300;Pelecanus crispus;;BGI_N334;latest;Scaffold;Major;Full;2014/05/09;ASM68737v1;BGI;GCA_000687375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1;;;na | 1 |
925459 | Balearica regulorum | Gruidae | Gruiformes | Chordata | GCF_000709895.1 | 450 | 118975 | 0.376805526481055 | 60.8 | ["u12", "u6atac"] | ASM70989v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1 | GCF_000709895.1;PRJNA264996;SAMN02318095;JJRR00000000.1;representative genome;100784;925459;Balearica regulorum gibbericeps;;BGI_N312;latest;Scaffold;Major;Full;2014/06/25;ASM70989v1;BGI;GCA_000709895.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1;;;na | 1 |
151771 | Dendronephthya gigantea | Nephtheidae | Alcyonacea | Cnidaria | GCF_004324835.1 | 638 | 169687 | 0.3745780126229268 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | DenGig_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0 | GCF_004324835.1;PRJNA529494;SAMN10516674;RSEI00000000.1;representative genome;151771;151771;Dendronephthya gigantea;;DGI-Jeju-01;latest;Contig;Major;Full;2019/03/04;DenGig_1.0;Ulsan National Institute of Science and Technology;GCA_004324835.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0;;;na | 1 |
1529436 | Anneissia japonica | Comatulidae | Comatulida | Echinodermata | GCF_011630105.1 | 583 | 155652 | 0.373155822959004 | 92.9 | ["u11", "u12", "u4atac", "u6atac"] | ASM1163010v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1 | GCF_011630105.1;PRJNA615663;SAMN12241982;VUNX00000000.1;representative genome;1529436;1529436;Anneissia japonica;;Jap-2015-1;latest;Scaffold;Major;Full;2020/03/23;ASM1163010v1;Center for Ecological and Environmental Sciences;GCA_011630105.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1;;;na | 1 |
37040 | Gavia stellata | Gaviidae | Gaviiformes | Chordata | GCF_000690875.1 | 420 | 112258 | 0.3727435701734145 | 61.6 | ["u12", "u6atac"] | ASM69087v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1 | GCF_000690875.1;PRJNA261843;SAMN02324832;JJRM00000000.1;representative genome;37040;37040;Gavia stellata;;BGI_N328;latest;Scaffold;Major;Full;2014/05/13;ASM69087v1;BGI;GCA_000690875.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1;;;na | 1 |
2607531 | Octopus sinensis | Octopodidae | Octopoda | Mollusca | GCF_006345805.1 | 548 | 146482 | 0.3727130517581446 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM634580v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1 | GCF_006345805.1;PRJNA551489;SAMN11633729;VCDQ00000000.1;representative genome;2607531;2607531;Octopus sinensis;;Ov201803;latest;Chromosome;Major;Full;2019/06/17;ASM634580v1;Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;GCA_006345805.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1;;;na | 1 |
57397 | Apaloderma vittatum | Trogonidae | Trogoniformes | Chordata | GCF_000703405.1 | 423 | 113269 | 0.3720578404813003 | 55.7 | ["u12", "u4atac", "u6atac"] | ASM70340v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1 | GCF_000703405.1;PRJNA263608;SAMN02318033;JMFV00000000.1;representative genome;57397;57397;Apaloderma vittatum;;BGI_N311;latest;Scaffold;Major;Full;2014/06/16;ASM70340v1;BGI;GCA_000703405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1;;;na | 1 |
45264 | Acropora millepora | Acroporidae | Scleractinia | Cnidaria | GCF_013753865.1 | 721 | 193229 | 0.3717452951791699 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | Amil_v2.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1 | GCF_013753865.1;PRJNA767661;SAMN14973899;JACAWQ000000000.1;representative genome;45264;45264;Acropora millepora;;JS-1;latest;Chromosome;Major;Full;2020/07/29;Amil_v2.1;Columbia;GCA_013753865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1;;;na | 1 |
57421 | Merops nubicus | Meropidae | Coraciiformes | Chordata | GCF_000691845.1 | 408 | 109553 | 0.3710406416820509 | 56.1 | ["u12", "u6atac"] | ASM69184v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1 | GCF_000691845.1;PRJNA253837;SAMN02338310;JJRJ00000000.1;representative genome;57421;57421;Merops nubicus;;BGI_N331;latest;Scaffold;Major;Full;2014/05/16;ASM69184v1;BGI;GCA_000691845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1;;;na | 1 |
57412 | Colius striatus | Coliidae | Coliiformes | Chordata | GCF_000690715.1 | 408 | 109695 | 0.37056211002425 | 60.0 | ["u12", "u6atac"] | ASM69071v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1 | GCF_000690715.1;PRJNA265879;SAMN02324230;JJRP00000000.1;representative genome;57412;57412;Colius striatus;;BGI_N325;latest;Scaffold;Major;Full;2014/05/13;ASM69071v1;BGI;GCA_000690715.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1;;;na | 1 |
121530 | Tauraco erythrolophus | Musophagidae | Musophagiformes | Chordata | GCF_000709365.1 | 438 | 117995 | 0.3698293549939628 | 62.7 | ["u12", "u6atac"] | ASM70936v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1 | GCF_000709365.1;PRJNA265115;SAMN02339893;JNOY00000000.1;representative genome;121530;121530;Tauraco erythrolophus;;BGI_N340;latest;Scaffold;Major;Full;2014/06/25;ASM70936v1;BGI;GCA_000709365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1;;;na | 1 |
70779 | Acropora digitifera | Acroporidae | Scleractinia | Cnidaria | GCF_000222465.1 | 559 | 150659 | 0.3696649869724503 | 75.3 | ["u11", "u12", "u4atac", "u6atac"] | Adig_1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1 | GCF_000222465.1;PRJNA314803;SAMD00004206;BACK00000000.2;representative genome;70779;70779;Acropora digitifera;;;latest;Scaffold;Major;Full;2016/01/15;Adig_1.1;Okinawa Institute of Science and Technology;GCA_000222465.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1;;;na | 1 |
57068 | Acanthisitta chloris | Acanthisittidae | Passeriformes | Chordata | GCF_000695815.1 | 446 | 120410 | 0.3690342225458397 | 60.4 | ["u11", "u12", "u6atac"] | ASM69581v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1 | GCF_000695815.1;PRJNA253841;SAMN02318032;JJRS00000000.1;representative genome;57068;57068;Acanthisitta chloris;;BGI_N310;latest;Scaffold;Major;Full;2014/05/27;ASM69581v1;BGI;GCA_000695815.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1;;;na | 1 |
97097 | Phaethon lepturus | Phaethontidae | Pelecaniformes | Chordata | GCF_000687285.1 | 439 | 118622 | 0.3687185560343017 | 66.7 | ["u12", "u6atac"] | ASM68728v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1 | GCF_000687285.1;PRJNA265998;SAMN02339888;JJRF00000000.1;representative genome;97097;97097;Phaethon lepturus;;BGI_N335;latest;Scaffold;Major;Full;2014/05/08;ASM68728v1;BGI;GCA_000687285.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1;;;na | 1 |
2897299 | Xenia sp. carnegie-2017 | Xeniidae | Alcyonacea | Cnidaria | GCF_021976095.1 | 553 | 150473 | 0.3661621177810443 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | XeniaSp_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1 | GCF_021976095.1;PRJNA809689;SAMN23741995;JAJSDR000000000.1;representative genome;2897299;2897299;Xenia sp. Carnegie-2017;;Carnegie-2017;latest;Scaffold;Major;Full;2022/02/04;XeniaSp_v1;Carnegie Institution of Washington;GCA_021976095.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1;;;na | 1 |
54380 | Cariama cristata | Cariamidae | Cariamiformes | Chordata | GCF_000690535.1 | 435 | 118570 | 0.3655308600478971 | 61.6 | ["u12", "u6atac"] | ASM69053v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1 | GCF_000690535.1;PRJNA263623;SAMN02318733;JJRQ00000000.1;representative genome;54380;54380;Cariama cristata;;BGI_N322;latest;Scaffold;Major;Full;2014/05/12;ASM69053v1;BGI;GCA_000690535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1;;;na | 1 |
279965 | Antrostomus carolinensis | Caprimulgidae | Caprimulgiformes | Chordata | GCF_000700745.1 | 419 | 114394 | 0.3649412522972137 | 55.3 | ["u12", "u6atac"] | ASM70074v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1 | GCF_000700745.1;PRJNA265383;SAMN02318612;JMFU00000000.1;representative genome;279965;279965;Antrostomus carolinensis;;BGI_N321;latest;Scaffold;Major;Full;2014/06/10;ASM70074v1;BGI;GCA_000700745.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1;;;na | 1 |
175835 | Buceros rhinoceros | Bucerotidae | Bucerotiformes | Chordata | GCF_000710305.1 | 419 | 115044 | 0.3628868122255614 | 61.6 | ["u12", "u6atac"] | ASM71030v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1 | GCF_000710305.1;PRJNA266010;SAMN02318191;JMFK00000000.1;representative genome;175836;175835;Buceros rhinoceros silvestris;;BGI_N320;latest;Scaffold;Major;Full;2014/06/25;ASM71030v1;BGI;GCA_000710305.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1;;;na | 1 |
55661 | Cuculus canorus | Cuculidae | Cuculiformes | Chordata | GCF_000709325.1 | 526 | 144534 | 0.3626085757617537 | 94.1 | ["u11", "u4atac", "u6atac"] | ASM70932v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1 | GCF_000709325.1;PRJNA263299;SAMN02298149;JNOX00000000.1;representative genome;55661;55661;Cuculus canorus;;BGI_N303;latest;Scaffold;Major;Full;2014/06/17;ASM70932v1;BGI;GCA_000709325.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1;;;na | 1 |
94827 | Tinamus guttatus | Tinamidae | Tinamiformes | Chordata | GCF_000705375.1 | 503 | 138386 | 0.3621597102722318 | 76.9 | ["u4atac", "u6atac"] | ASM70537v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2 | GCF_000705375.1;PRJNA265201;SAMN02316659;JMFW00000000.2;representative genome;94827;94827;Tinamus guttatus;;BGI_N309;latest;Scaffold;Major;Full;2014/08/05;ASM70537v2;BGI;GCA_000705375.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2;;;na | 1 |
9818 | Orycteropus afer | Orycteropodidae | Tubulidentata | Chordata | GCF_000298275.1 | 619 | 170416 | 0.3619142280819715 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | OryAfe1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0 | GCF_000298275.1;PRJNA237355;SAMN00744890;ALYB00000000.1;representative genome;1230840;9818;Orycteropus afer afer;;SDZICR_OR568_19922;latest;Scaffold;Major;Full;2012/09/20;OryAfe1.0;Broad Institute;GCA_000298275.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0;;;na | 1 |
111125 | Ranitomeya imitator | Dendrobatidae | Anura | Chordata | GCA_905332335.1 | 789 | 217221 | 0.361910004128251 | 89.0 | ["u11", "u12", "u4atac", "u6atac"] | Ranitomeya_imitator_genomeassembly_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0 | GCA_905332335.1;PRJEB28312;SAMEA7339828;CAJOBX000000000.1;representative genome;111125;111125;Ranitomeya imitator;;;latest;Scaffold;Major;Full;2021/03/21;Ranitomeya_imitator_genomeassembly_1.0;EAST CAROLINA UNIVERSITY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0;;;na | 1 |
7654 | Lytechinus variegatus | Toxopneustidae | Temnopleuroida | Echinodermata | GCF_018143015.1 | 685 | 188916 | 0.3612850143195447 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | Lvar_3.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0 | GCF_018143015.1;PRJNA729485;SAMN15823010;JAFCXN000000000.1;representative genome;7654;7654;Lytechinus variegatus;;NC3;latest;Chromosome;Major;Full;2021/04/29;Lvar_3.0;Duke University;GCA_018143015.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0;;;na | 1 |
407821 | Stegodyphus mimosarum | Eresidae | Araneae | Arthropoda | GCA_000611955.2 | 325 | 89933 | 0.3600788849741851 | 78.4 | ["u11", "u12", "u4atac", "u6atac"] | Stegodyphus_mimosarum_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1 | GCA_000611955.2;PRJNA222714;SAMN02720821;AZAQ00000000.1;representative genome;407821;407821;Stegodyphus mimosarum;;;latest;Scaffold;Major;Full;2014/08/01;Stegodyphus_mimosarum_v1;BGI;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1;;;na | 1 |
40157 | Lonchura striata | Estrildidae | Passeriformes | Chordata | GCF_005870125.1 | 579 | 160531 | 0.359381788839923 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | lonStrDom2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2 | GCF_005870125.1;PRJNA391487;SAMN11521339;SWKX00000000.1;representative genome;299123;40157;Lonchura striata domestica;;Mets1;latest;Chromosome;Major;Full;2019/06/05;lonStrDom2;HHMI/UCSF;GCA_005870125.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2;;;na | 1 |
240206 | Pterocles gutturalis | Pteroclidae | Ciconiiformes | Chordata | GCF_000699245.1 | 408 | 113344 | 0.3586750123074759 | 64.7 | ["u12", "u6atac"] | ASM69924v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1 | GCF_000699245.1;PRJNA265368;SAMN02339892;JMFR00000000.1;representative genome;240206;240206;Pterocles gutturalis;;BGI_N339;latest;Scaffold;Major;Full;2014/06/09;ASM69924v1;BGI;GCA_000699245.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1;;;na | 1 |
308060 | Apteryx rowi | Apterygidae | Apterygiformes | Chordata | GCF_003343035.1 | 579 | 160955 | 0.3584384711577748 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | aptRow1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1 | GCF_003343035.1;PRJNA484763;SAMN08476454;PTFB00000000.1;representative genome;308060;308060;Apteryx rowi;;R43461;latest;Scaffold;Major;Full;2018/07/26;aptRow1;Harvard University;GCA_003343035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1;;;na | 1 |
54383 | Eurypyga helias | Eurypygidae | Gruiformes | Chordata | GCF_000690775.1 | 395 | 110024 | 0.3577282895153914 | 57.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM69077v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1 | GCF_000690775.1;PRJNA265393;SAMN02324546;JJRO00000000.1;representative genome;54383;54383;Eurypyga helias;;BGI_N326;latest;Scaffold;Major;Full;2014/05/13;ASM69077v1;BGI;GCA_000690775.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1;;;na | 1 |
143302 | Condylura cristata | Talpidae | Eulipotyphla | Chordata | GCF_000260355.1 | 591 | 165023 | 0.3568538891639595 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | ConCri1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0 | GCF_000260355.1;PRJNA193510;SAMN00727830;AJFV00000000.1;representative genome;143302;143302;Condylura cristata;;star-nosed mole 26May11;latest;Scaffold;Major;Full;2012/05/01;ConCri1.0;Broad Institute;GCA_000260355.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0;;;na | 1 |
291302 | Miniopterus natalensis | Vespertilionidae | Chiroptera | Chordata | GCF_001595765.1 | 622 | 173932 | 0.3563367210147003 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | Mnat.v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1 | GCF_001595765.1;PRJNA317472;SAMN03652541;LDJU00000000.1;representative genome;291302;291302;Miniopterus natalensis;;MN2012-01;latest;Scaffold;Major;Full;2016/03/22;Mnat.v1;University of California, San Francisco;GCA_001595765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1;;;na | 1 |
356909 | Onychostruthus taczanowskii | Passeridae | Passeriformes | Chordata | GCF_017590055.1 | 568 | 158940 | 0.3560949921007096 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM1759005v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1 | GCF_017590055.1;PRJNA703052;SAMN18252883;JAGGNI000000000.1;representative genome;356909;356909;Onychostruthus taczanowskii;;IOZ18803;latest;Scaffold;Major;Full;2021/03/26;ASM1759005v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1;;;na | 1 |
8673 | Pseudonaja textilis | Elapidae | Squamata | Chordata | GCF_900518735.1 | 638 | 178673 | 0.3558063922458745 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | EBS10Xv2-PRI | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI | GCF_900518735.1;PRJNA495355;SAMEA4800208;ULFR00000000.1;representative genome;8673;8673;Pseudonaja textilis;;;latest;Scaffold;Major;Full;2018/09/24;EBS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518735.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI;;;na | 1 |
79684 | Microtus ochrogaster | Cricetidae | Rodentia | Chordata | GCF_000317375.1 | 645 | 180696 | 0.3556834913229771 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | MicOch1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0 | GCF_000317375.1;PRJNA210839;SAMN00727831;AHZW00000000.1;representative genome;79684;79684;Microtus ochrogaster;;Prairie Vole_2;latest;Chromosome;Major;Full;2012/12/07;MicOch1.0;Broad Institute;GCA_000317375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0;;;na | 1 |
48883 | Geospiza fortis | Thraupidae | Passeriformes | Chordata | GCF_000277835.1 | 525 | 147101 | 0.3556284123392898 | 84.7 | ["u12", "u4atac", "u6atac"] | GeoFor_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0 | GCF_000277835.1;PRJNA217051;SAMN00839579;AKZB00000000.1;representative genome;48883;48883;Geospiza fortis;;;latest;Scaffold;Major;Full;2012/07/25;GeoFor_1.0;Beijing Genomics Institute;GCA_000277835.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0;;;na | 1 |
2489341 | Strigops habroptila | Psittacidae | Psittaciformes | Chordata | GCF_004027225.2 | 608 | 170361 | 0.3556200246828372 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | bStrHab1.2.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri | GCF_004027225.2;PRJNA558775;SAMN09948751;RXXE00000000.2;representative genome;2489341;2489341;Strigops habroptila;;Jane;latest;Chromosome;Major;Full;2020/03/04;bStrHab1.2.pri;Vertebrate Genomes Project;GCA_004027225.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri;;;na | 1 |
8897 | Chaetura pelagica | Apodidae | Apodiformes | Chordata | GCF_000747805.1 | 496 | 138981 | 0.3556141872853589 | 87.8 | ["u12", "u6atac"] | ChaPel_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0 | GCF_000747805.1;PRJNA264987;SAMN03018471;AVOS00000000.1;representative genome;8897;8897;Chaetura pelagica;;M959;latest;Scaffold;Major;Full;2014/09/04;ChaPel_1.0;BGI;GCA_000747805.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0;;;na | 1 |
118200 | Dryobates pubescens | Picidae | Piciformes | Chordata | GCF_000699005.1 | 490 | 137302 | 0.3556084533209475 | 90.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM69900v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1 | GCF_000699005.1;PRJNA263502;SAMN02314405;JJRU00000000.1;representative genome;118200;118200;Dryobates pubescens;;BGI_N307;latest;Scaffold;Major;Full;2014/06/06;ASM69900v1;BGI;GCA_000699005.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1;;;na | 1 |
1868482 | Carlito syrichta | Tarsiidae | Primates | Chordata | GCF_000164805.1 | 621 | 174099 | 0.3554258241758242 | 94.5 | ["u11", "u12", "u4atac", "u6atac"] | Tarsius_syrichta-2.0.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1 | GCF_000164805.1;PRJNA236776;SAMN02445010;ABRT00000000.2;representative genome;1868482;1868482;Carlito syrichta;;Samal-C Ts95f;latest;Scaffold;Major;Full;2013/09/18;Tarsius_syrichta-2.0.1;Washington University (WashU);GCA_000164805.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1;;;na | 1 |
9172 | Sturnus vulgaris | Sturnidae | Passeriformes | Chordata | GCF_001447265.1 | 554 | 155352 | 0.3553423216553564 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | Sturnus_vulgaris-1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0 | GCF_001447265.1;PRJNA304638;SAMN04029017;LNCF00000000.1;representative genome;9172;9172;Sturnus vulgaris;;715;latest;Scaffold;Major;Full;2015/11/20;Sturnus_vulgaris-1.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_001447265.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0;;;na | 1 |
30464 | Nothoprocta perdicaria | Tinamidae | Tinamiformes | Chordata | GCF_003342845.1 | 552 | 154817 | 0.3552832289581576 | 92.9 | ["u12", "u4atac", "u6atac"] | notPer1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1 | GCF_003342845.1;PRJNA484763;SAMN08476459;PTEW00000000.1;representative genome;30464;30464;Nothoprocta perdicaria;;Ctin4;latest;Scaffold;Major;Full;2018/07/26;notPer1;Harvard University;GCA_003342845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1;;;na | 1 |
202533 | Stegodyphus dumicola | Eresidae | Araneae | Arthropoda | GCF_010614865.1 | 440 | 123763 | 0.3542587538143201 | 81.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM1061486v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1 | GCF_010614865.1;PRJNA642917;SAMN13619660;JAADJH000000000.1;representative genome;202533;202533;Stegodyphus dumicola;ecotype=Namibia, Etosha;AA2019;latest;Scaffold;Major;Full;2020/02/14;ASM1061486v1;None;GCA_010614865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1;;;na | 1 |
52644 | Haliaeetus leucocephalus | Accipitridae | Accipitriformes | Chordata | GCF_000737465.1 | 551 | 155131 | 0.3539265939543428 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | Haliaeetus_leucocephalus-4.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0 | GCF_000737465.1;PRJNA269279;SAMN02664716;JPRR00000000.1;representative genome;52644;52644;Haliaeetus leucocephalus;;CR32;latest;Scaffold;Major;Full;2014/08/04;Haliaeetus_leucocephalus-4.0;The Bald Eagle Consortium;GCA_000737465.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0;;;na | 1 |
259920 | Rhincodon typus | Rhincodontidae | Orectolobiformes | Chordata | GCF_001642345.1 | 589 | 165843 | 0.3538982887906172 | 81.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM164234v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2 | GCF_001642345.1;PRJNA378405;SAMN04562461;LVEK00000000.2;representative genome;259920;259920;Rhincodon typus;;Ralph;latest;Scaffold;Major;Full;2017/03/03;ASM164234v2;Emory University;GCA_001642345.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2;;;na | 1 |
29088 | Neomonachus schauinslandi | Phocidae | Carnivora | Chordata | GCF_002201575.2 | 631 | 177741 | 0.3537550736662704 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM220157v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2 | GCF_002201575.2;PRJNA392091;SAMN06841387;NINY00000000.2;representative genome;29088;29088;Neomonachus schauinslandi;;;latest;Chromosome;Major;Full;2021/10/20;ASM220157v2;Johns Hopkins University;GCA_002201575.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2;;;na | 1 |
13146 | Melopsittacus undulatus | Psittaculidae | Psittaciformes | Chordata | GCF_012275295.1 | 599 | 168872 | 0.3534528031344596 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | bMelUnd1.mat.Z | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z | GCF_012275295.1;PRJNA629576;SAMN12623090;JAAVWG000000000.1;representative genome;13146;13146;Melopsittacus undulatus;;bMelUnd1;latest;Chromosome;Major;Full;2020/04/13;bMelUnd1.mat.Z;G10K;GCA_012275295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z;;;na | 1 |
221976 | Pyrgilauda ruficollis | Passeridae | Passeriformes | Chordata | GCF_017590135.1 | 563 | 158977 | 0.3528895574777485 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM1759013v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1 | GCF_017590135.1;PRJNA703052;SAMN18252884;JAGGNJ000000000.1;representative genome;221976;221976;Pyrgilauda ruficollis;;IOZ18807;latest;Scaffold;Major;Full;2021/03/26;ASM1759013v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1;;;na | 1 |
9925 | Capra hircus | Bovidae | Artiodactyla | Chordata | GCF_001704415.1 | 674 | 190325 | 0.3528814286985796 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | ARS1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1 | GCF_001704415.1;PRJNA340281;SAMN03863711;LWLT00000000.1;representative genome;9925;9925;Capra hircus;breed=San Clemente;;latest;Chromosome;Major;Full;2016/08/24;ARS1;USDA ARS;GCA_001704415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1;;;na | 1 |
87175 | Camarhynchus parvulus | Thraupidae | Passeriformes | Chordata | GCF_901933205.1 | 574 | 162114 | 0.3528225806451612 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | STF_HiC | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC | GCF_901933205.1;PRJNA566393;SAMEA5603054;CABFNF000000000.1;representative genome;87175;87175;Camarhynchus parvulus;;;latest;Chromosome;Major;Full;2019/09/06;STF_HiC;UPPSALA UNIVERISTY;GCA_901933205.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC;;;na | 1 |
84834 | Molothrus ater | Icteridae | Passeriformes | Chordata | GCF_012460135.1 | 583 | 164681 | 0.3527689030883919 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | BPBGC_Mater_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0 | GCF_012460135.1;PRJNA665515;SAMN14074414;JAAQZI000000000.1;representative genome;84834;84834;Molothrus ater;breed=brown headed cowbird;BHLD 08-10-18;latest;Chromosome;Major;Full;2020/04/20;BPBGC_Mater_1.0;Brood Parasitic Bird Genomes Consortium;GCA_012460135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0;;;na | 1 |
8969 | Haliaeetus albicilla | Accipitridae | Accipitriformes | Chordata | GCF_000691405.1 | 427 | 120618 | 0.352761369738527 | 67.1 | ["u11", "u6atac"] | ASM69140v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1 | GCF_000691405.1;PRJNA263514;SAMN02333670;JJRL00000000.1;representative genome;8969;8969;Haliaeetus albicilla;;BGI_N329;latest;Scaffold;Major;Full;2014/05/15;ASM69140v1;BGI;GCA_000691405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1;;;na | 1 |
35005 | Thamnophis elegans | Colubridae | Squamata | Chordata | GCF_009769535.1 | 630 | 177990 | 0.3527040644944575 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | rThaEle1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri | GCF_009769535.1;PRJNA602516;SAMN12629499;WNNA00000000.1;representative genome;35005;35005;Thamnophis elegans;;rThaEle1;latest;Chromosome;Major;Full;2019/12/23;rThaEle1.pri;Vertebrate Genomes Project;GCA_009769535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri;;;na | 1 |
28377 | Anolis carolinensis | Dactyloidae | Squamata | Chordata | GCF_000090745.1 | 610 | 172461 | 0.3524565062893263 | 87.8 | ["u11", "u12", "u4atac", "u6atac"] | AnoCar2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0 | GCF_000090745.1;PRJNA60547;SAMN02981230;AAWZ00000000.2;representative genome;28377;28377;Anolis carolinensis;;;latest;Chromosome;Major;Full;2011/01/10;AnoCar2.0;Broad Institute;GCA_000090745.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0;;;na | 1 |
8663 | Notechis scutatus | Elapidae | Squamata | Chordata | GCF_900518725.1 | 607 | 171967 | 0.3517331695388645 | 95.3 | ["u12", "u4atac", "u6atac"] | TS10Xv2-PRI | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI | GCF_900518725.1;PRJNA494227;SAMEA4800209;ULFQ00000000.1;representative genome;8663;8663;Notechis scutatus;;;latest;Scaffold;Major;Full;2018/09/24;TS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI;;;na | 1 |
158814 | Terrapene carolina | Emydidae | Testudines | Chordata | GCF_002925995.2 | 683 | 193499 | 0.351731880400861 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | T_m_triunguis-2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0 | GCF_002925995.2;PRJNA435426;SAMN08285364;PRFB00000000.2;representative genome;2587831;158814;Terrapene carolina triunguis;;2854851;latest;Scaffold;Major;Full;2018/09/21;T_m_triunguis-2.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_002925995.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0;;;na | 1 |
50402 | Charadrius vociferus | Charadriidae | Charadriiformes | Chordata | GCF_000708025.1 | 503 | 142517 | 0.3516990630681024 | 88.2 | ["u11", "u12", "u6atac"] | ASM70802v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2 | GCF_000708025.1;PRJNA263452;SAMN02296710;JMFX00000000.2;representative genome;50402;50402;Charadrius vociferus;;BGI_N301;latest;Scaffold;Major;Full;2014/08/05;ASM70802v2;BGI;GCA_000708025.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2;;;na | 1 |
181119 | Pseudopodoces humilis | Paridae | Passeriformes | Chordata | GCF_000331425.1 | 568 | 161095 | 0.3513481749070597 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | PseHum1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0 | GCF_000331425.1;PRJNA217046;SAMN02981490;ANZD00000000.1;representative genome;181119;181119;Pseudopodoces humilis;;;latest;Scaffold;Major;Full;2013/01/11;PseHum1.0;Beijing Genomics Institute (BGI)-Shenzhen;GCA_000331425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0;;;na | 1 |
61221 | Varanus komodoensis | Varanidae | Squamata | Chordata | GCF_004798865.1 | 626 | 177618 | 0.3512039675949821 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM479886v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1 | GCF_004798865.1;PRJNA771140;SAMN10967258;SJPD00000000.1;representative genome;61221;61221;Varanus komodoensis;strain=SLA01;;latest;Scaffold;Major;Full;2019/04/17;ASM479886v1;Gladstone Institutes;GCA_004798865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1;;;na | 1 |
103944 | Protobothrops mucrosquamatus | Viperidae | Squamata | Chordata | GCF_001527695.2 | 604 | 171534 | 0.3508812696789785 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | P.Mucros_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0 | GCF_001527695.2;PRJNA313429;SAMD00043515;BCNE00000000.2;representative genome;103944;103944;Protobothrops mucrosquamatus;;PMUCROS;latest;Scaffold;Minor;Full;2016/01/22;P.Mucros_1.0;Okinawa Institute of Science and Technology;GCA_001527695.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0;;;na | 1 |
219594 | Aythya fuligula | Anatidae | Anseriformes | Chordata | GCF_009819795.1 | 566 | 160783 | 0.350792381731526 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | bAytFul2.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri | GCF_009819795.1;PRJNA602521;SAMN12621346;WNMM00000000.1;representative genome;219594;219594;Aythya fuligula;;bAytFul2;latest;Chromosome;Major;Full;2019/12/31;bAytFul2.pri;Vertebrate Genomes Project;GCA_009819795.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri;;;na | 1 |
43150 | Hirundo rustica | Hirundinidae | Passeriformes | Chordata | GCF_015227805.1 | 577 | 163915 | 0.3507769374802422 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | bHirRus1.pri.v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2 | GCF_015227805.1;PRJNA713843;SAMN14675488;JADDRP000000000.2;representative genome;43150;43150;Hirundo rustica;;bHirRus1;latest;Chromosome;Major;Full;2021/03/02;bHirRus1.pri.v2;Vertebrate Genomes Project;GCA_015227805.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2;;;na | 1 |
164674 | Empidonax traillii | Tyrannidae | Passeriformes | Chordata | GCF_003031625.1 | 569 | 161724 | 0.3506004571977842 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM303162v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1 | GCF_003031625.1;PRJNA516471;SAMN08663748;PWAB00000000.1;representative genome;164674;164674;Empidonax traillii;ecotype=Southwest subspecies;1590-97213;latest;Scaffold;Major;Full;2018/04/03;ASM303162v1;UCLA;GCA_003031625.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1;;;na | 1 |
10047 | Meriones unguiculatus | Muridae | Rodentia | Chordata | GCF_002204375.1 | 656 | 186791 | 0.3499655902735173 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | MunDraft-v1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0 | GCF_002204375.1;PRJNA391923;SAMN06897401;NHTI00000000.1;representative genome;10047;10047;Meriones unguiculatus;strain=243;;latest;Scaffold;Major;Full;2017/06/21;MunDraft-v1.0;Lucigen Corp.;GCA_002204375.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0;;;na | 1 |
9999 | Urocitellus parryii | Sciuridae | Rodentia | Chordata | GCF_003426925.1 | 619 | 176328 | 0.3498222631635461 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM342692v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1 | GCF_003426925.1;PRJNA489874;SAMN09469529;QVIC00000000.1;representative genome;9999;9999;Urocitellus parryii;ecotype=Arctic tundra;AGS 11-09-20;latest;Scaffold;Major;Full;2018/08/24;ASM342692v1;UAF;GCA_003426925.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1;;;na | 1 |
176946 | Python bivittatus | Pythonidae | Squamata | Chordata | GCF_000186305.1 | 604 | 172190 | 0.3495491741611398 | 90.2 | ["u11", "u12", "u4atac", "u6atac"] | Python_molurus_bivittatus-5.0.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2 | GCF_000186305.1;PRJNA238085;SAMN02981298;AEQU00000000.2;representative genome;176946;176946;Python bivittatus;;;latest;Scaffold;Major;Full;2013/09/15;Python_molurus_bivittatus-5.0.2;The Consortium for Comparative Genomics, UC Denver;GCA_000186305.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2;;;na | 1 |
8790 | Dromaius novaehollandiae | Dromaiidae | Casuariiformes | Chordata | GCF_003342905.1 | 565 | 161258 | 0.349146907423543 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | droNov1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1 | GCF_003342905.1;PRJNA484763;SAMN08476457;PTEY00000000.1;representative genome;8790;8790;Dromaius novaehollandiae;;6597;latest;Scaffold;Major;Full;2018/07/26;droNov1;Harvard University;GCA_003342905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1;;;na | 1 |
9778 | Trichechus manatus | Trichechidae | Sirenia | Chordata | GCF_000243295.1 | 617 | 176114 | 0.3491181513147099 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | TriManLat1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0 | GCF_000243295.1;PRJNA189960;SAMN00632092;AHIN00000000.1;representative genome;127582;9778;Trichechus manatus latirostris;;Lorelei;latest;Scaffold;Major;Full;2012/01/23;TriManLat1.0;Broad Institute;GCA_000243295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0;;;na | 1 |
188344 | Leptosomus discolor | Leptosomidae | Coraciiformes | Chordata | GCF_000691785.1 | 418 | 119316 | 0.3491071875991782 | 61.2 | ["u11", "u12", "u6atac"] | ASM69178v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1 | GCF_000691785.1;PRJNA263616;SAMN02333687;JJRK00000000.1;representative genome;188344;188344;Leptosomus discolor;;BGI_N330;latest;Scaffold;Major;Full;2014/05/23;ASM69178v1;BGI;GCA_000691785.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1;;;na | 1 |
9715 | Mirounga leonina | Phocidae | Carnivora | Chordata | GCF_011800145.1 | 662 | 188996 | 0.349049341446182 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | KU_Mleo_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0 | GCF_011800145.1;PRJNA638103;SAMN13282320;JAAMPH000000000.1;representative genome;9715;9715;Mirounga leonina;;KUSES-001;latest;Scaffold;Major;Full;2020/03/31;KU_Mleo_1.0;Earth Biogenome Project;GCA_011800145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0;;;na | 1 |
9054 | Phasianus colchicus | Phasianidae | Galliformes | Chordata | GCF_004143745.1 | 567 | 161975 | 0.3488329170306751 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM414374v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1 | GCF_004143745.1;PRJNA589599;SAMN08888240;QCWP00000000.1;representative genome;9054;9054;Phasianus colchicus;;SZU-A5-319;latest;Scaffold;Major;Full;2019/02/06;ASM414374v1;Shenzhen University;GCA_004143745.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1;;;na | 1 |
9244 | Calypte anna | Trochilidae | Apodiformes | Chordata | GCF_003957555.1 | 537 | 153405 | 0.3488326772420781 | 94.9 | ["u12", "u4atac", "u6atac"] | bCalAnn1_v1.p | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p | GCF_003957555.1;PRJNA558503;SAMN02265252;RRCD00000000.1;representative genome;9244;9244;Calypte anna;;BGI_N300;latest;Chromosome;Major;Full;2019/05/16;bCalAnn1_v1.p;Vertebrate Genomes Project;GCA_003957555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p;;;na | 1 |
260995 | Geotrypetes seraphini | Dermophiidae | Gymnophiona | Chordata | GCF_902459505.1 | 657 | 187723 | 0.3487631383374031 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | aGeoSer1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1 | GCF_902459505.1;PRJNA627137;SAMEA104387963;CABPRQ000000000.1;representative genome;260995;260995;Geotrypetes seraphini;;;latest;Chromosome;Major;Full;2019/08/18;aGeoSer1.1;SC;GCA_902459505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1;;;na | 1 |
8475 | Chelydra serpentina | Chelydridae | Testudines | Chordata | GCA_018859375.1 | 546 | 156074 | 0.348614480909207 | 91.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM1885937v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1 | GCA_018859375.1;PRJNA574487;SAMN13981802;JAHGAV000000000.1;representative genome;8475;8475;Chelydra serpentina;;KW;latest;Scaffold;Major;Full;2021/06/11;ASM1885937v1;University of North Dakota;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1;;;na | 1 |
30611 | Otolemur garnettii | Galagidae | Primates | Chordata | GCF_000181295.1 | 617 | 176440 | 0.3484753497461269 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | OtoGar3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3 | GCF_000181295.1;PRJNA169348;SAMN02981229;AAQR00000000.3;representative genome;30611;30611;Otolemur garnettii;;467f Iridium;latest;Scaffold;Major;Full;2011/03/16;OtoGar3;Broad Institute of MIT and Harvard, USA, Cambridge;GCA_000181295.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3;;;na | 1 |
40151 | Monodon monoceros | Monodontidae | Artiodactyla | Chordata | GCF_005190385.1 | 624 | 178652 | 0.348066668154131 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | NGI_Narwhal_1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1 | GCF_005190385.1;PRJNA542700;SAMN10872456;SIHG00000000.1;representative genome;40151;40151;Monodon monoceros;ecotype=Baffin Bay Population;NGI;latest;Scaffold;Major;Full;2019/05/06;NGI_Narwhal_1;The Narwhal Genome Initiative;GCA_005190385.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1;;;na | 1 |
185453 | Chrysochloris asiatica | Chrysochloridae | Chordata | GCF_000296735.1 | 623 | 178592 | 0.3476271517451106 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ChrAsi1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0 | GCF_000296735.1;PRJNA232768;SAMN00744889;AMDV00000000.1;representative genome;185453;185453;Chrysochloris asiatica;;;latest;Scaffold;Major;Full;2012/09/19;ChrAsi1.0;Broad Institute;GCA_000296735.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0;;;na | 1 | |
118797 | Lipotes vexillifer | Lipotidae | Artiodactyla | Chordata | GCF_000442215.1 | 606 | 173778 | 0.3475089457748417 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | Lipotes_vexillifer_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1 | GCF_000442215.1;PRJNA232751;SAMN02953859;AUPI00000000.1;representative genome;118797;118797;Lipotes vexillifer;;;latest;Scaffold;Major;Full;2013/07/31;Lipotes_vexillifer_v1;BGI;GCA_000442215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1;;;na | 1 |
91951 | Catharus ustulatus | Turdidae | Passeriformes | Chordata | GCF_009819885.2 | 608 | 174426 | 0.3473610841322257 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | bCatUst1.pri.v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2 | GCF_009819885.2;PRJNA613294;SAMN12618602;WNMQ00000000.2;representative genome;91951;91951;Catharus ustulatus;;bCatUst1;latest;Chromosome;Major;Full;2020/12/22;bCatUst1.pri.v2;Vertebrate Genomes Project;GCA_009819885.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2;;;na | 1 |
30331 | Bufo gargarizans | Bufonidae | Anura | Chordata | GCF_014858855.1 | 699 | 200536 | 0.3473550823663875 | 94.9 | ["u11", "u12", "u4atac", "u6atac"] | ASM1485885v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1 | GCF_014858855.1;PRJNA769289;SAMN14734018;JABFFT000000000.1;representative genome;30331;30331;Bufo gargarizans;;SCDJY-AF-19;latest;Chromosome;Major;Full;2020/10/21;ASM1485885v1;Chengdu Institute of Biology, CAS;GCA_014858855.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1;;;na | 1 |
7868 | Callorhinchus milii | Callorhinchidae | Chimaeriformes | Chordata | GCF_018977255.1 | 606 | 173861 | 0.3473436237225377 | 92.5 | ["u11", "u12", "u4atac", "u6atac"] | IMCB_Cmil_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0 | GCF_018977255.1;PRJNA744271;SAMN12905446;WEZY00000000.1;representative genome;7868;7868;Callorhinchus milii;;IMCB2004;latest;Scaffold;Major;Full;2021/06/21;IMCB_Cmil_1.0;Institute of Molecular and Cell Biology, A*star, Singapore;GCA_018977255.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0;;;na | 1 |
9707 | Odobenus rosmarus | Odobenidae | Carnivora | Chordata | GCF_000321225.1 | 620 | 177897 | 0.3473058588257701 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | Oros_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0 | GCF_000321225.1;PRJNA189954;SAMN01180787;ANOP00000000.1;representative genome;9708;9707;Odobenus rosmarus divergens;;Ivan;latest;Scaffold;Major;Full;2013/01/16;Oros_1.0;Marine mammals;GCA_000321225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0;;;na | 1 |
13397 | Carcharodon carcharias | Alopiidae | Lamniformes | Chordata | GCF_017639515.1 | 663 | 190347 | 0.3471022459557091 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | sCarCar2.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri | GCF_017639515.1;PRJNA725502;SAMN12629504;JAGDEE000000000.1;representative genome;13397;13397;Carcharodon carcharias;;sCarCar2;latest;Chromosome;Major;Full;2021/03/30;sCarCar2.pri;Vertebrate Genomes Project;GCA_017639515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri;;;na | 1 |
189058 | Neophocaena asiaeorientalis | Phocoenidae | Artiodactyla | Chordata | GCF_003031525.2 | 618 | 177478 | 0.3470038630850777 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | Neophocaena_asiaeorientalis_V1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1 | GCF_003031525.2;PRJNA449518;SAMN05831577;MKKW00000000.1;representative genome;1706337;189058;Neophocaena asiaeorientalis asiaeorientalis;breed=wild;;latest;Scaffold;Minor;Full;2018/04/03;Neophocaena_asiaeorientalis_V1;Nanjing normal university;GCA_003031525.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1;;;na | 1 |
9417 | Artibeus jamaicensis | Phyllostomidae | Chiroptera | Chordata | GCF_014825515.1 | 640 | 183874 | 0.3468571490510205 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | WHU_Ajam_v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2 | GCF_014825515.1;PRJNA673233;SAMN12273914;VSFN00000000.1;representative genome;9417;9417;Artibeus jamaicensis;;1a;latest;Scaffold;Major;Full;2020/09/30;WHU_Ajam_v2;College of Life Sciences at Wuhan University;GCA_014825515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2;;;na | 1 |
9627 | Vulpes vulpes | Canidae | Carnivora | Chordata | GCF_003160815.1 | 637 | 183035 | 0.3468138856221961 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | VulVul2.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2 | GCF_003160815.1;PRJNA482864;SAMN06553695;NBDQ00000000.1;representative genome;9627;9627;Vulpes vulpes;strain=TameXAggressive cross;;latest;Scaffold;Major;Full;2018/05/25;VulVul2.2;University of Illinois at Urbana-Champaign;GCA_003160815.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2;;;na | 1 |
328815 | Manacus vitellinus | Pipridae | Passeriformes | Chordata | GCF_001715985.3 | 519 | 149246 | 0.3465429172370046 | 87.5 | ["u12", "u4atac", "u6atac"] | ASM171598v3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3 | GCF_001715985.3;PRJNA341382;SAMN02299332;MCBO00000000.3;representative genome;328815;328815;Manacus vitellinus;;BGI_N305;latest;Scaffold;Major;Full;2019/07/03;ASM171598v3;Smithsonian Institution National Museum of Natural History;GCA_001715985.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3;;;na | 1 |
44394 | Zonotrichia albicollis | Passerellidae | Passeriformes | Chordata | GCF_000385455.1 | 502 | 144378 | 0.3464936499171728 | 75.7 | ["u11", "u12", "u6atac"] | Zonotrichia_albicollis-1.0.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1 | GCF_000385455.1;PRJNA217032;SAMN02981528;ARWJ00000000.1;representative genome;44394;44394;Zonotrichia albicollis;;Tan morph;latest;Scaffold;Major;Full;2013/04/30;Zonotrichia_albicollis-1.0.1;White-throated sparrow consortium;GCA_000385455.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1;;;na | 1 |
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CREATE TABLE "genomes" ( "taxonomy_id" INTEGER, "species" TEXT, "family" TEXT, "order" TEXT, "phylum" TEXT, "accession" TEXT, "n_minor_introns" INTEGER, "n_major_introns" INTEGER, "percent_minor_introns" REAL, "busco_score" REAL, "minor_snRNAs" TEXT, "genome_version" TEXT, "source_url" TEXT, "source_metadata" TEXT, "minor_intron+" INTEGER ,PRIMARY KEY ([taxonomy_id]) ); CREATE INDEX [idx_genomes_phylum] ON [genomes] ([phylum]); CREATE INDEX [idx_genomes_order] ON [genomes] ([order]); CREATE INDEX [idx_genomes_family] ON [genomes] ([family]);