Where the Minor Things Are (WtMTA): (Yet Another) Minor Intron Database
Data license: ODbL · Data source: Larue & Roy, 2023
| taxonomy_id | species | family | order | phylum | accession | n_minor_introns | n_major_introns | percent_minor_introns | busco_score | minor_snRNAs | genome_version | source_url | source_metadata | minor_intron+ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5791 | Physarum polycephalum | Physaraceae | Physariida | Evosea | GCA_000413255.3 | 20295 | 159710 | 11.27468681425516 | 66.3 | ["u11", "u12", "u6atac"] | Physarum_polycephalum-10.0 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0 | GCA_000413255.3;PRJNA12851;SAMN02839457;ATCM00000000.3;representative genome;5791;5791;Physarum polycephalum;strain=LU352;;latest;Scaffold;Major;Full;2014/06/30;Physarum_polycephalum-10.0;WUGSC;na;na;ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0;;;na | 1 |
| 944036 | Blastocystis sp. subtype 1 | Blastocystidae | Opalinata | GCA_001651215.1 | 253 | 35751 | 0.7026997000333296 | 66.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM165121v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1 | GCA_001651215.1;PRJNA308101;SAMN04386717;LXWW00000000.1;representative genome;478820;944036;Blastocystis sp. ATCC 50177/Nand II;strain=NandII;;latest;Scaffold;Major;Full;2016/05/24;ASM165121v1;Dalhousie University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/651/215/GCA_001651215.1_ASM165121v1;;;na | 1 | |
| 423460 | Basidiobolus meristosporus | Basidiobolaceae | Basidiobolales | Zoopagomycota | GCA_002104905.1 | 249 | 44710 | 0.5538379412353477 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | Basme2finSC | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC | GCA_002104905.1;PRJNA196075;SAMN02745972;MCFE00000000.1;representative genome;1314790;423460;Basidiobolus meristosporus CBS 931.73;strain=CBS 931.73;;latest;Contig;Major;Full;2017/04/20;Basme2finSC;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/905/GCA_002104905.1_Basme2finSC;;;na | 1 |
| 46731 | Pocillopora damicornis | Pocilloporidae | Scleractinia | Cnidaria | GCF_003704095.1 | 633 | 144761 | 0.4353687222306284 | 88.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM370409v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1 | GCF_003704095.1;PRJNA506040;SAMN09007954;RCHS00000000.1;representative genome;46731;46731;Pocillopora damicornis;;RSMAS;latest;Scaffold;Major;Full;2018/10/31;ASM370409v1;University of Miami;GCA_003704095.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/704/095/GCF_003704095.1_ASM370409v1;;;na | 1 |
| 48498 | Orbicella faveolata | Merulinidae | Scleractinia | Cnidaria | GCF_002042975.1 | 658 | 153770 | 0.4260885331675602 | 87.1 | ["u11", "u12", "u4atac", "u6atac"] | ofav_dov_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1 | GCF_002042975.1;PRJNA381078;SAMN06562666;MZGG00000000.1;representative genome;48498;48498;Orbicella faveolata;;FL;latest;Scaffold;Major;Full;2017/03/20;ofav_dov_v1;Smithsonian Tropical Research Institute;GCA_002042975.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/042/975/GCF_002042975.1_ofav_dov_v1;;;na | 1 |
| 37653 | Octopus bimaculoides | Octopodidae | Octopoda | Mollusca | GCF_001194135.1 | 505 | 118177 | 0.4255068165349421 | 92.2 | ["u11", "u12", "u4atac", "u6atac"] | Octopus_bimaculoides_v2_0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0 | GCF_001194135.1;PRJNA305125;SAMN03271701;LGKD00000000.1;representative genome;37653;37653;Octopus bimaculoides;;UCB-OBI-ISO-001;latest;Scaffold;Major;Full;2015/08/18;Octopus_bimaculoides_v2_0;Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley;GCA_001194135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0;;;na | 1 |
| 7604 | Asterias rubens | Asteriidae | Forcipulatida | Echinodermata | GCF_902459465.1 | 605 | 144606 | 0.4166351034012574 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | eAstRub1.3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3 | GCF_902459465.1;PRJNA626669;SAMEA994741;CABPRM000000000.3;representative genome;7604;7604;Asterias rubens;;;latest;Chromosome;Major;Full;2020/02/12;eAstRub1.3;SC;GCA_902459465.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/465/GCF_902459465.1_eAstRub1.3;;;na | 1 |
| 45351 | Nematostella vectensis | Edwardsiidae | Actiniaria | Cnidaria | GCF_000209225.1 | 682 | 163077 | 0.4164656599026618 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM20922v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1 | GCF_000209225.1;PRJNA19965;SAMN02953687;ABAV00000000.1;representative genome;45351;45351;Nematostella vectensis;strain=CH2 x CH6;;latest;Scaffold;Major;Full;2007/08/22;ASM20922v1;DOE Joint Genome Institute (JGI);GCA_000209225.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1;;;na | 1 |
| 6105 | Actinia tenebrosa | Actiniidae | Actiniaria | Cnidaria | GCF_009602425.1 | 609 | 146062 | 0.4152150050112156 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM960242v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1 | GCF_009602425.1;PRJNA590223;SAMN10439458;WAHB00000000.1;representative genome;6105;6105;Actinia tenebrosa;;;latest;Scaffold;Major;Full;2019/11/06;ASM960242v1;QUT;GCA_009602425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/425/GCF_009602425.1_ASM960242v1;;;na | 1 |
| 2652724 | Exaiptasia diaphana | Aiptasiidae | Actiniaria | Cnidaria | GCF_001417965.1 | 590 | 142729 | 0.4116690738841326 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | Aiptasia genome 1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1 | GCF_001417965.1;PRJNA386175;SAMN03839803;LJWW00000000.1;representative genome;2652724;2652724;Exaiptasia diaphana;;CC7;latest;Scaffold;Major;Full;2015/10/28;Aiptasia genome 1.1;KAUST;GCA_001417965.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/417/965/GCF_001417965.1_Aiptasia_genome_1.1;;;na | 1 |
| 9915 | Bos indicus | Bovidae | Artiodactyla | Chordata | GCF_000247795.1 | 688 | 171989 | 0.398431754084215 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | Bos_indicus_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0 | GCF_000247795.1;PRJNA360096;SAMN02953802;AGFL00000000.1;representative genome;9915;9915;Bos indicus;breed=Nelore;QUIL7308;latest;Chromosome;Major;Full;2014/11/25;Bos_indicus_1.0;Genoa Biotecnologia SA ;GCA_000247795.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/247/795/GCF_000247795.1_Bos_indicus_1.0;;;na | 1 |
| 133434 | Acanthaster planci | Acanthasteridae | Valvatida | Echinodermata | GCF_001949145.1 | 602 | 151442 | 0.3959380179421746 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | OKI-Apl_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0 | GCF_001949145.1;PRJNA397419;SAMD00054104;BDGF00000000.1;representative genome;133434;133434;Acanthaster planci;;;latest;Scaffold;Major;Full;2016/12/20;OKI-Apl_1.0;Okinawa Institute of Science and Technology;GCA_001949145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/949/145/GCF_001949145.1_OKI-Apl_1.0;;;na | 1 |
| 50429 | Stylophora pistillata | Pocilloporidae | Scleractinia | Cnidaria | GCF_002571385.1 | 637 | 165556 | 0.383289308213944 | 90.6 | ["u11", "u12", "u4atac", "u6atac"] | Stylophora pistillata v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1 | GCF_002571385.1;PRJNA415215;SAMN03491624;LSMT00000000.1;representative genome;50429;50429;Stylophora pistillata;;CSM Monaco;latest;Scaffold;Major;Full;2017/10/17;Stylophora pistillata v1;KAUST;GCA_002571385.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/571/385/GCF_002571385.1_Stylophora_pistillata_v1;;;na | 1 |
| 187382 | Chlamydotis macqueenii | Otididae | Gruiformes | Chordata | GCF_000695195.1 | 433 | 112937 | 0.381935256240628 | 60.0 | ["u12", "u6atac"] | ASM69519v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1 | GCF_000695195.1;PRJNA266006;SAMN02324157;JMFJ00000000.1;representative genome;187382;187382;Chlamydotis macqueenii;;BGI_N324;latest;Scaffold;Major;Full;2014/06/02;ASM69519v1;BGI;GCA_000695195.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/195/GCF_000695195.1_ASM69519v1;;;na | 1 |
| 36300 | Pelecanus crispus | Pelecanidae | Pelecaniformes | Chordata | GCF_000687375.1 | 436 | 114858 | 0.3781636511873991 | 59.2 | ["u11", "u6atac"] | ASM68737v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1 | GCF_000687375.1;PRJNA253833;SAMN02339887;JJRG00000000.1;representative genome;36300;36300;Pelecanus crispus;;BGI_N334;latest;Scaffold;Major;Full;2014/05/09;ASM68737v1;BGI;GCA_000687375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/375/GCF_000687375.1_ASM68737v1;;;na | 1 |
| 925459 | Balearica regulorum | Gruidae | Gruiformes | Chordata | GCF_000709895.1 | 450 | 118975 | 0.376805526481055 | 60.8 | ["u12", "u6atac"] | ASM70989v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1 | GCF_000709895.1;PRJNA264996;SAMN02318095;JJRR00000000.1;representative genome;100784;925459;Balearica regulorum gibbericeps;;BGI_N312;latest;Scaffold;Major;Full;2014/06/25;ASM70989v1;BGI;GCA_000709895.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/895/GCF_000709895.1_ASM70989v1;;;na | 1 |
| 151771 | Dendronephthya gigantea | Nephtheidae | Alcyonacea | Cnidaria | GCF_004324835.1 | 638 | 169687 | 0.3745780126229268 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | DenGig_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0 | GCF_004324835.1;PRJNA529494;SAMN10516674;RSEI00000000.1;representative genome;151771;151771;Dendronephthya gigantea;;DGI-Jeju-01;latest;Contig;Major;Full;2019/03/04;DenGig_1.0;Ulsan National Institute of Science and Technology;GCA_004324835.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/324/835/GCF_004324835.1_DenGig_1.0;;;na | 1 |
| 1529436 | Anneissia japonica | Comatulidae | Comatulida | Echinodermata | GCF_011630105.1 | 583 | 155652 | 0.373155822959004 | 92.9 | ["u11", "u12", "u4atac", "u6atac"] | ASM1163010v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1 | GCF_011630105.1;PRJNA615663;SAMN12241982;VUNX00000000.1;representative genome;1529436;1529436;Anneissia japonica;;Jap-2015-1;latest;Scaffold;Major;Full;2020/03/23;ASM1163010v1;Center for Ecological and Environmental Sciences;GCA_011630105.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/630/105/GCF_011630105.1_ASM1163010v1;;;na | 1 |
| 37040 | Gavia stellata | Gaviidae | Gaviiformes | Chordata | GCF_000690875.1 | 420 | 112258 | 0.3727435701734145 | 61.6 | ["u12", "u6atac"] | ASM69087v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1 | GCF_000690875.1;PRJNA261843;SAMN02324832;JJRM00000000.1;representative genome;37040;37040;Gavia stellata;;BGI_N328;latest;Scaffold;Major;Full;2014/05/13;ASM69087v1;BGI;GCA_000690875.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/875/GCF_000690875.1_ASM69087v1;;;na | 1 |
| 2607531 | Octopus sinensis | Octopodidae | Octopoda | Mollusca | GCF_006345805.1 | 548 | 146482 | 0.3727130517581446 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM634580v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1 | GCF_006345805.1;PRJNA551489;SAMN11633729;VCDQ00000000.1;representative genome;2607531;2607531;Octopus sinensis;;Ov201803;latest;Chromosome;Major;Full;2019/06/17;ASM634580v1;Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;GCA_006345805.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/805/GCF_006345805.1_ASM634580v1;;;na | 1 |
| 57397 | Apaloderma vittatum | Trogonidae | Trogoniformes | Chordata | GCF_000703405.1 | 423 | 113269 | 0.3720578404813003 | 55.7 | ["u12", "u4atac", "u6atac"] | ASM70340v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1 | GCF_000703405.1;PRJNA263608;SAMN02318033;JMFV00000000.1;representative genome;57397;57397;Apaloderma vittatum;;BGI_N311;latest;Scaffold;Major;Full;2014/06/16;ASM70340v1;BGI;GCA_000703405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/703/405/GCF_000703405.1_ASM70340v1;;;na | 1 |
| 45264 | Acropora millepora | Acroporidae | Scleractinia | Cnidaria | GCF_013753865.1 | 721 | 193229 | 0.3717452951791699 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | Amil_v2.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1 | GCF_013753865.1;PRJNA767661;SAMN14973899;JACAWQ000000000.1;representative genome;45264;45264;Acropora millepora;;JS-1;latest;Chromosome;Major;Full;2020/07/29;Amil_v2.1;Columbia;GCA_013753865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/753/865/GCF_013753865.1_Amil_v2.1;;;na | 1 |
| 57421 | Merops nubicus | Meropidae | Coraciiformes | Chordata | GCF_000691845.1 | 408 | 109553 | 0.3710406416820509 | 56.1 | ["u12", "u6atac"] | ASM69184v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1 | GCF_000691845.1;PRJNA253837;SAMN02338310;JJRJ00000000.1;representative genome;57421;57421;Merops nubicus;;BGI_N331;latest;Scaffold;Major;Full;2014/05/16;ASM69184v1;BGI;GCA_000691845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/845/GCF_000691845.1_ASM69184v1;;;na | 1 |
| 57412 | Colius striatus | Coliidae | Coliiformes | Chordata | GCF_000690715.1 | 408 | 109695 | 0.37056211002425 | 60.0 | ["u12", "u6atac"] | ASM69071v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1 | GCF_000690715.1;PRJNA265879;SAMN02324230;JJRP00000000.1;representative genome;57412;57412;Colius striatus;;BGI_N325;latest;Scaffold;Major;Full;2014/05/13;ASM69071v1;BGI;GCA_000690715.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/715/GCF_000690715.1_ASM69071v1;;;na | 1 |
| 121530 | Tauraco erythrolophus | Musophagidae | Musophagiformes | Chordata | GCF_000709365.1 | 438 | 117995 | 0.3698293549939628 | 62.7 | ["u12", "u6atac"] | ASM70936v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1 | GCF_000709365.1;PRJNA265115;SAMN02339893;JNOY00000000.1;representative genome;121530;121530;Tauraco erythrolophus;;BGI_N340;latest;Scaffold;Major;Full;2014/06/25;ASM70936v1;BGI;GCA_000709365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/365/GCF_000709365.1_ASM70936v1;;;na | 1 |
| 70779 | Acropora digitifera | Acroporidae | Scleractinia | Cnidaria | GCF_000222465.1 | 559 | 150659 | 0.3696649869724503 | 75.3 | ["u11", "u12", "u4atac", "u6atac"] | Adig_1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1 | GCF_000222465.1;PRJNA314803;SAMD00004206;BACK00000000.2;representative genome;70779;70779;Acropora digitifera;;;latest;Scaffold;Major;Full;2016/01/15;Adig_1.1;Okinawa Institute of Science and Technology;GCA_000222465.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1;;;na | 1 |
| 57068 | Acanthisitta chloris | Acanthisittidae | Passeriformes | Chordata | GCF_000695815.1 | 446 | 120410 | 0.3690342225458397 | 60.4 | ["u11", "u12", "u6atac"] | ASM69581v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1 | GCF_000695815.1;PRJNA253841;SAMN02318032;JJRS00000000.1;representative genome;57068;57068;Acanthisitta chloris;;BGI_N310;latest;Scaffold;Major;Full;2014/05/27;ASM69581v1;BGI;GCA_000695815.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1;;;na | 1 |
| 97097 | Phaethon lepturus | Phaethontidae | Pelecaniformes | Chordata | GCF_000687285.1 | 439 | 118622 | 0.3687185560343017 | 66.7 | ["u12", "u6atac"] | ASM68728v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1 | GCF_000687285.1;PRJNA265998;SAMN02339888;JJRF00000000.1;representative genome;97097;97097;Phaethon lepturus;;BGI_N335;latest;Scaffold;Major;Full;2014/05/08;ASM68728v1;BGI;GCA_000687285.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/285/GCF_000687285.1_ASM68728v1;;;na | 1 |
| 2897299 | Xenia sp. carnegie-2017 | Xeniidae | Alcyonacea | Cnidaria | GCF_021976095.1 | 553 | 150473 | 0.3661621177810443 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | XeniaSp_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1 | GCF_021976095.1;PRJNA809689;SAMN23741995;JAJSDR000000000.1;representative genome;2897299;2897299;Xenia sp. Carnegie-2017;;Carnegie-2017;latest;Scaffold;Major;Full;2022/02/04;XeniaSp_v1;Carnegie Institution of Washington;GCA_021976095.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/976/095/GCF_021976095.1_XeniaSp_v1;;;na | 1 |
| 54380 | Cariama cristata | Cariamidae | Cariamiformes | Chordata | GCF_000690535.1 | 435 | 118570 | 0.3655308600478971 | 61.6 | ["u12", "u6atac"] | ASM69053v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1 | GCF_000690535.1;PRJNA263623;SAMN02318733;JJRQ00000000.1;representative genome;54380;54380;Cariama cristata;;BGI_N322;latest;Scaffold;Major;Full;2014/05/12;ASM69053v1;BGI;GCA_000690535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/535/GCF_000690535.1_ASM69053v1;;;na | 1 |
| 279965 | Antrostomus carolinensis | Caprimulgidae | Caprimulgiformes | Chordata | GCF_000700745.1 | 419 | 114394 | 0.3649412522972137 | 55.3 | ["u12", "u6atac"] | ASM70074v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1 | GCF_000700745.1;PRJNA265383;SAMN02318612;JMFU00000000.1;representative genome;279965;279965;Antrostomus carolinensis;;BGI_N321;latest;Scaffold;Major;Full;2014/06/10;ASM70074v1;BGI;GCA_000700745.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/700/745/GCF_000700745.1_ASM70074v1;;;na | 1 |
| 175835 | Buceros rhinoceros | Bucerotidae | Bucerotiformes | Chordata | GCF_000710305.1 | 419 | 115044 | 0.3628868122255614 | 61.6 | ["u12", "u6atac"] | ASM71030v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1 | GCF_000710305.1;PRJNA266010;SAMN02318191;JMFK00000000.1;representative genome;175836;175835;Buceros rhinoceros silvestris;;BGI_N320;latest;Scaffold;Major;Full;2014/06/25;ASM71030v1;BGI;GCA_000710305.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/710/305/GCF_000710305.1_ASM71030v1;;;na | 1 |
| 55661 | Cuculus canorus | Cuculidae | Cuculiformes | Chordata | GCF_000709325.1 | 526 | 144534 | 0.3626085757617537 | 94.1 | ["u11", "u4atac", "u6atac"] | ASM70932v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1 | GCF_000709325.1;PRJNA263299;SAMN02298149;JNOX00000000.1;representative genome;55661;55661;Cuculus canorus;;BGI_N303;latest;Scaffold;Major;Full;2014/06/17;ASM70932v1;BGI;GCA_000709325.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/709/325/GCF_000709325.1_ASM70932v1;;;na | 1 |
| 94827 | Tinamus guttatus | Tinamidae | Tinamiformes | Chordata | GCF_000705375.1 | 503 | 138386 | 0.3621597102722318 | 76.9 | ["u4atac", "u6atac"] | ASM70537v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2 | GCF_000705375.1;PRJNA265201;SAMN02316659;JMFW00000000.2;representative genome;94827;94827;Tinamus guttatus;;BGI_N309;latest;Scaffold;Major;Full;2014/08/05;ASM70537v2;BGI;GCA_000705375.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/705/375/GCF_000705375.1_ASM70537v2;;;na | 1 |
| 9818 | Orycteropus afer | Orycteropodidae | Tubulidentata | Chordata | GCF_000298275.1 | 619 | 170416 | 0.3619142280819715 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | OryAfe1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0 | GCF_000298275.1;PRJNA237355;SAMN00744890;ALYB00000000.1;representative genome;1230840;9818;Orycteropus afer afer;;SDZICR_OR568_19922;latest;Scaffold;Major;Full;2012/09/20;OryAfe1.0;Broad Institute;GCA_000298275.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/275/GCF_000298275.1_OryAfe1.0;;;na | 1 |
| 111125 | Ranitomeya imitator | Dendrobatidae | Anura | Chordata | GCA_905332335.1 | 789 | 217221 | 0.361910004128251 | 89.0 | ["u11", "u12", "u4atac", "u6atac"] | Ranitomeya_imitator_genomeassembly_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0 | GCA_905332335.1;PRJEB28312;SAMEA7339828;CAJOBX000000000.1;representative genome;111125;111125;Ranitomeya imitator;;;latest;Scaffold;Major;Full;2021/03/21;Ranitomeya_imitator_genomeassembly_1.0;EAST CAROLINA UNIVERSITY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/332/335/GCA_905332335.1_Ranitomeya_imitator_genomeassembly_1.0;;;na | 1 |
| 7654 | Lytechinus variegatus | Toxopneustidae | Temnopleuroida | Echinodermata | GCF_018143015.1 | 685 | 188916 | 0.3612850143195447 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | Lvar_3.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0 | GCF_018143015.1;PRJNA729485;SAMN15823010;JAFCXN000000000.1;representative genome;7654;7654;Lytechinus variegatus;;NC3;latest;Chromosome;Major;Full;2021/04/29;Lvar_3.0;Duke University;GCA_018143015.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/143/015/GCF_018143015.1_Lvar_3.0;;;na | 1 |
| 407821 | Stegodyphus mimosarum | Eresidae | Araneae | Arthropoda | GCA_000611955.2 | 325 | 89933 | 0.3600788849741851 | 78.4 | ["u11", "u12", "u4atac", "u6atac"] | Stegodyphus_mimosarum_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1 | GCA_000611955.2;PRJNA222714;SAMN02720821;AZAQ00000000.1;representative genome;407821;407821;Stegodyphus mimosarum;;;latest;Scaffold;Major;Full;2014/08/01;Stegodyphus_mimosarum_v1;BGI;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1;;;na | 1 |
| 40157 | Lonchura striata | Estrildidae | Passeriformes | Chordata | GCF_005870125.1 | 579 | 160531 | 0.359381788839923 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | lonStrDom2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2 | GCF_005870125.1;PRJNA391487;SAMN11521339;SWKX00000000.1;representative genome;299123;40157;Lonchura striata domestica;;Mets1;latest;Chromosome;Major;Full;2019/06/05;lonStrDom2;HHMI/UCSF;GCA_005870125.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/125/GCF_005870125.1_lonStrDom2;;;na | 1 |
| 240206 | Pterocles gutturalis | Pteroclidae | Ciconiiformes | Chordata | GCF_000699245.1 | 408 | 113344 | 0.3586750123074759 | 64.7 | ["u12", "u6atac"] | ASM69924v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1 | GCF_000699245.1;PRJNA265368;SAMN02339892;JMFR00000000.1;representative genome;240206;240206;Pterocles gutturalis;;BGI_N339;latest;Scaffold;Major;Full;2014/06/09;ASM69924v1;BGI;GCA_000699245.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/245/GCF_000699245.1_ASM69924v1;;;na | 1 |
| 308060 | Apteryx rowi | Apterygidae | Apterygiformes | Chordata | GCF_003343035.1 | 579 | 160955 | 0.3584384711577748 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | aptRow1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1 | GCF_003343035.1;PRJNA484763;SAMN08476454;PTFB00000000.1;representative genome;308060;308060;Apteryx rowi;;R43461;latest;Scaffold;Major;Full;2018/07/26;aptRow1;Harvard University;GCA_003343035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/343/035/GCF_003343035.1_aptRow1;;;na | 1 |
| 54383 | Eurypyga helias | Eurypygidae | Gruiformes | Chordata | GCF_000690775.1 | 395 | 110024 | 0.3577282895153914 | 57.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM69077v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1 | GCF_000690775.1;PRJNA265393;SAMN02324546;JJRO00000000.1;representative genome;54383;54383;Eurypyga helias;;BGI_N326;latest;Scaffold;Major;Full;2014/05/13;ASM69077v1;BGI;GCA_000690775.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/690/775/GCF_000690775.1_ASM69077v1;;;na | 1 |
| 143302 | Condylura cristata | Talpidae | Eulipotyphla | Chordata | GCF_000260355.1 | 591 | 165023 | 0.3568538891639595 | 93.3 | ["u11", "u12", "u4atac", "u6atac"] | ConCri1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0 | GCF_000260355.1;PRJNA193510;SAMN00727830;AJFV00000000.1;representative genome;143302;143302;Condylura cristata;;star-nosed mole 26May11;latest;Scaffold;Major;Full;2012/05/01;ConCri1.0;Broad Institute;GCA_000260355.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/355/GCF_000260355.1_ConCri1.0;;;na | 1 |
| 291302 | Miniopterus natalensis | Vespertilionidae | Chiroptera | Chordata | GCF_001595765.1 | 622 | 173932 | 0.3563367210147003 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | Mnat.v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1 | GCF_001595765.1;PRJNA317472;SAMN03652541;LDJU00000000.1;representative genome;291302;291302;Miniopterus natalensis;;MN2012-01;latest;Scaffold;Major;Full;2016/03/22;Mnat.v1;University of California, San Francisco;GCA_001595765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/595/765/GCF_001595765.1_Mnat.v1;;;na | 1 |
| 356909 | Onychostruthus taczanowskii | Passeridae | Passeriformes | Chordata | GCF_017590055.1 | 568 | 158940 | 0.3560949921007096 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM1759005v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1 | GCF_017590055.1;PRJNA703052;SAMN18252883;JAGGNI000000000.1;representative genome;356909;356909;Onychostruthus taczanowskii;;IOZ18803;latest;Scaffold;Major;Full;2021/03/26;ASM1759005v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/055/GCF_017590055.1_ASM1759005v1;;;na | 1 |
| 8673 | Pseudonaja textilis | Elapidae | Squamata | Chordata | GCF_900518735.1 | 638 | 178673 | 0.3558063922458745 | 96.9 | ["u11", "u12", "u4atac", "u6atac"] | EBS10Xv2-PRI | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI | GCF_900518735.1;PRJNA495355;SAMEA4800208;ULFR00000000.1;representative genome;8673;8673;Pseudonaja textilis;;;latest;Scaffold;Major;Full;2018/09/24;EBS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518735.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/735/GCF_900518735.1_EBS10Xv2-PRI;;;na | 1 |
| 79684 | Microtus ochrogaster | Cricetidae | Rodentia | Chordata | GCF_000317375.1 | 645 | 180696 | 0.3556834913229771 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | MicOch1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0 | GCF_000317375.1;PRJNA210839;SAMN00727831;AHZW00000000.1;representative genome;79684;79684;Microtus ochrogaster;;Prairie Vole_2;latest;Chromosome;Major;Full;2012/12/07;MicOch1.0;Broad Institute;GCA_000317375.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/375/GCF_000317375.1_MicOch1.0;;;na | 1 |
| 48883 | Geospiza fortis | Thraupidae | Passeriformes | Chordata | GCF_000277835.1 | 525 | 147101 | 0.3556284123392898 | 84.7 | ["u12", "u4atac", "u6atac"] | GeoFor_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0 | GCF_000277835.1;PRJNA217051;SAMN00839579;AKZB00000000.1;representative genome;48883;48883;Geospiza fortis;;;latest;Scaffold;Major;Full;2012/07/25;GeoFor_1.0;Beijing Genomics Institute;GCA_000277835.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/277/835/GCF_000277835.1_GeoFor_1.0;;;na | 1 |
| 2489341 | Strigops habroptila | Psittacidae | Psittaciformes | Chordata | GCF_004027225.2 | 608 | 170361 | 0.3556200246828372 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | bStrHab1.2.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri | GCF_004027225.2;PRJNA558775;SAMN09948751;RXXE00000000.2;representative genome;2489341;2489341;Strigops habroptila;;Jane;latest;Chromosome;Major;Full;2020/03/04;bStrHab1.2.pri;Vertebrate Genomes Project;GCA_004027225.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/027/225/GCF_004027225.2_bStrHab1.2.pri;;;na | 1 |
| 8897 | Chaetura pelagica | Apodidae | Apodiformes | Chordata | GCF_000747805.1 | 496 | 138981 | 0.3556141872853589 | 87.8 | ["u12", "u6atac"] | ChaPel_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0 | GCF_000747805.1;PRJNA264987;SAMN03018471;AVOS00000000.1;representative genome;8897;8897;Chaetura pelagica;;M959;latest;Scaffold;Major;Full;2014/09/04;ChaPel_1.0;BGI;GCA_000747805.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/747/805/GCF_000747805.1_ChaPel_1.0;;;na | 1 |
| 118200 | Dryobates pubescens | Picidae | Piciformes | Chordata | GCF_000699005.1 | 490 | 137302 | 0.3556084533209475 | 90.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM69900v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1 | GCF_000699005.1;PRJNA263502;SAMN02314405;JJRU00000000.1;representative genome;118200;118200;Dryobates pubescens;;BGI_N307;latest;Scaffold;Major;Full;2014/06/06;ASM69900v1;BGI;GCA_000699005.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/005/GCF_000699005.1_ASM69900v1;;;na | 1 |
| 1868482 | Carlito syrichta | Tarsiidae | Primates | Chordata | GCF_000164805.1 | 621 | 174099 | 0.3554258241758242 | 94.5 | ["u11", "u12", "u4atac", "u6atac"] | Tarsius_syrichta-2.0.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1 | GCF_000164805.1;PRJNA236776;SAMN02445010;ABRT00000000.2;representative genome;1868482;1868482;Carlito syrichta;;Samal-C Ts95f;latest;Scaffold;Major;Full;2013/09/18;Tarsius_syrichta-2.0.1;Washington University (WashU);GCA_000164805.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/164/805/GCF_000164805.1_Tarsius_syrichta-2.0.1;;;na | 1 |
| 9172 | Sturnus vulgaris | Sturnidae | Passeriformes | Chordata | GCF_001447265.1 | 554 | 155352 | 0.3553423216553564 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | Sturnus_vulgaris-1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0 | GCF_001447265.1;PRJNA304638;SAMN04029017;LNCF00000000.1;representative genome;9172;9172;Sturnus vulgaris;;715;latest;Scaffold;Major;Full;2015/11/20;Sturnus_vulgaris-1.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_001447265.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/447/265/GCF_001447265.1_Sturnus_vulgaris-1.0;;;na | 1 |
| 30464 | Nothoprocta perdicaria | Tinamidae | Tinamiformes | Chordata | GCF_003342845.1 | 552 | 154817 | 0.3552832289581576 | 92.9 | ["u12", "u4atac", "u6atac"] | notPer1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1 | GCF_003342845.1;PRJNA484763;SAMN08476459;PTEW00000000.1;representative genome;30464;30464;Nothoprocta perdicaria;;Ctin4;latest;Scaffold;Major;Full;2018/07/26;notPer1;Harvard University;GCA_003342845.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/845/GCF_003342845.1_notPer1;;;na | 1 |
| 202533 | Stegodyphus dumicola | Eresidae | Araneae | Arthropoda | GCF_010614865.1 | 440 | 123763 | 0.3542587538143201 | 81.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM1061486v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1 | GCF_010614865.1;PRJNA642917;SAMN13619660;JAADJH000000000.1;representative genome;202533;202533;Stegodyphus dumicola;ecotype=Namibia, Etosha;AA2019;latest;Scaffold;Major;Full;2020/02/14;ASM1061486v1;None;GCA_010614865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/614/865/GCF_010614865.1_ASM1061486v1;;;na | 1 |
| 52644 | Haliaeetus leucocephalus | Accipitridae | Accipitriformes | Chordata | GCF_000737465.1 | 551 | 155131 | 0.3539265939543428 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | Haliaeetus_leucocephalus-4.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0 | GCF_000737465.1;PRJNA269279;SAMN02664716;JPRR00000000.1;representative genome;52644;52644;Haliaeetus leucocephalus;;CR32;latest;Scaffold;Major;Full;2014/08/04;Haliaeetus_leucocephalus-4.0;The Bald Eagle Consortium;GCA_000737465.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/737/465/GCF_000737465.1_Haliaeetus_leucocephalus-4.0;;;na | 1 |
| 259920 | Rhincodon typus | Rhincodontidae | Orectolobiformes | Chordata | GCF_001642345.1 | 589 | 165843 | 0.3538982887906172 | 81.6 | ["u11", "u12", "u4atac", "u6atac"] | ASM164234v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2 | GCF_001642345.1;PRJNA378405;SAMN04562461;LVEK00000000.2;representative genome;259920;259920;Rhincodon typus;;Ralph;latest;Scaffold;Major;Full;2017/03/03;ASM164234v2;Emory University;GCA_001642345.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/345/GCF_001642345.1_ASM164234v2;;;na | 1 |
| 29088 | Neomonachus schauinslandi | Phocidae | Carnivora | Chordata | GCF_002201575.2 | 631 | 177741 | 0.3537550736662704 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM220157v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2 | GCF_002201575.2;PRJNA392091;SAMN06841387;NINY00000000.2;representative genome;29088;29088;Neomonachus schauinslandi;;;latest;Chromosome;Major;Full;2021/10/20;ASM220157v2;Johns Hopkins University;GCA_002201575.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/575/GCF_002201575.2_ASM220157v2;;;na | 1 |
| 13146 | Melopsittacus undulatus | Psittaculidae | Psittaciformes | Chordata | GCF_012275295.1 | 599 | 168872 | 0.3534528031344596 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | bMelUnd1.mat.Z | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z | GCF_012275295.1;PRJNA629576;SAMN12623090;JAAVWG000000000.1;representative genome;13146;13146;Melopsittacus undulatus;;bMelUnd1;latest;Chromosome;Major;Full;2020/04/13;bMelUnd1.mat.Z;G10K;GCA_012275295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/295/GCF_012275295.1_bMelUnd1.mat.Z;;;na | 1 |
| 221976 | Pyrgilauda ruficollis | Passeridae | Passeriformes | Chordata | GCF_017590135.1 | 563 | 158977 | 0.3528895574777485 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM1759013v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1 | GCF_017590135.1;PRJNA703052;SAMN18252884;JAGGNJ000000000.1;representative genome;221976;221976;Pyrgilauda ruficollis;;IOZ18807;latest;Scaffold;Major;Full;2021/03/26;ASM1759013v1;Institute of Zoology, Chinese Academy of Sciences;GCA_017590135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/590/135/GCF_017590135.1_ASM1759013v1;;;na | 1 |
| 9925 | Capra hircus | Bovidae | Artiodactyla | Chordata | GCF_001704415.1 | 674 | 190325 | 0.3528814286985796 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | ARS1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1 | GCF_001704415.1;PRJNA340281;SAMN03863711;LWLT00000000.1;representative genome;9925;9925;Capra hircus;breed=San Clemente;;latest;Chromosome;Major;Full;2016/08/24;ARS1;USDA ARS;GCA_001704415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ARS1;;;na | 1 |
| 87175 | Camarhynchus parvulus | Thraupidae | Passeriformes | Chordata | GCF_901933205.1 | 574 | 162114 | 0.3528225806451612 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | STF_HiC | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC | GCF_901933205.1;PRJNA566393;SAMEA5603054;CABFNF000000000.1;representative genome;87175;87175;Camarhynchus parvulus;;;latest;Chromosome;Major;Full;2019/09/06;STF_HiC;UPPSALA UNIVERISTY;GCA_901933205.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/933/205/GCF_901933205.1_STF_HiC;;;na | 1 |
| 84834 | Molothrus ater | Icteridae | Passeriformes | Chordata | GCF_012460135.1 | 583 | 164681 | 0.3527689030883919 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | BPBGC_Mater_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0 | GCF_012460135.1;PRJNA665515;SAMN14074414;JAAQZI000000000.1;representative genome;84834;84834;Molothrus ater;breed=brown headed cowbird;BHLD 08-10-18;latest;Chromosome;Major;Full;2020/04/20;BPBGC_Mater_1.0;Brood Parasitic Bird Genomes Consortium;GCA_012460135.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/460/135/GCF_012460135.1_BPBGC_Mater_1.0;;;na | 1 |
| 8969 | Haliaeetus albicilla | Accipitridae | Accipitriformes | Chordata | GCF_000691405.1 | 427 | 120618 | 0.352761369738527 | 67.1 | ["u11", "u6atac"] | ASM69140v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1 | GCF_000691405.1;PRJNA263514;SAMN02333670;JJRL00000000.1;representative genome;8969;8969;Haliaeetus albicilla;;BGI_N329;latest;Scaffold;Major;Full;2014/05/15;ASM69140v1;BGI;GCA_000691405.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/405/GCF_000691405.1_ASM69140v1;;;na | 1 |
| 35005 | Thamnophis elegans | Colubridae | Squamata | Chordata | GCF_009769535.1 | 630 | 177990 | 0.3527040644944575 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | rThaEle1.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri | GCF_009769535.1;PRJNA602516;SAMN12629499;WNNA00000000.1;representative genome;35005;35005;Thamnophis elegans;;rThaEle1;latest;Chromosome;Major;Full;2019/12/23;rThaEle1.pri;Vertebrate Genomes Project;GCA_009769535.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/769/535/GCF_009769535.1_rThaEle1.pri;;;na | 1 |
| 28377 | Anolis carolinensis | Dactyloidae | Squamata | Chordata | GCF_000090745.1 | 610 | 172461 | 0.3524565062893263 | 87.8 | ["u11", "u12", "u4atac", "u6atac"] | AnoCar2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0 | GCF_000090745.1;PRJNA60547;SAMN02981230;AAWZ00000000.2;representative genome;28377;28377;Anolis carolinensis;;;latest;Chromosome;Major;Full;2011/01/10;AnoCar2.0;Broad Institute;GCA_000090745.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0;;;na | 1 |
| 8663 | Notechis scutatus | Elapidae | Squamata | Chordata | GCF_900518725.1 | 607 | 171967 | 0.3517331695388645 | 95.3 | ["u12", "u4atac", "u6atac"] | TS10Xv2-PRI | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI | GCF_900518725.1;PRJNA494227;SAMEA4800209;ULFQ00000000.1;representative genome;8663;8663;Notechis scutatus;;;latest;Scaffold;Major;Full;2018/09/24;TS10Xv2-PRI;UNIVERSITY OF NEW SOUTH WALES;GCA_900518725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/518/725/GCF_900518725.1_TS10Xv2-PRI;;;na | 1 |
| 158814 | Terrapene carolina | Emydidae | Testudines | Chordata | GCF_002925995.2 | 683 | 193499 | 0.351731880400861 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | T_m_triunguis-2.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0 | GCF_002925995.2;PRJNA435426;SAMN08285364;PRFB00000000.2;representative genome;2587831;158814;Terrapene carolina triunguis;;2854851;latest;Scaffold;Major;Full;2018/09/21;T_m_triunguis-2.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_002925995.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/925/995/GCF_002925995.2_T_m_triunguis-2.0;;;na | 1 |
| 50402 | Charadrius vociferus | Charadriidae | Charadriiformes | Chordata | GCF_000708025.1 | 503 | 142517 | 0.3516990630681024 | 88.2 | ["u11", "u12", "u6atac"] | ASM70802v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2 | GCF_000708025.1;PRJNA263452;SAMN02296710;JMFX00000000.2;representative genome;50402;50402;Charadrius vociferus;;BGI_N301;latest;Scaffold;Major;Full;2014/08/05;ASM70802v2;BGI;GCA_000708025.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2;;;na | 1 |
| 181119 | Pseudopodoces humilis | Paridae | Passeriformes | Chordata | GCF_000331425.1 | 568 | 161095 | 0.3513481749070597 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | PseHum1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0 | GCF_000331425.1;PRJNA217046;SAMN02981490;ANZD00000000.1;representative genome;181119;181119;Pseudopodoces humilis;;;latest;Scaffold;Major;Full;2013/01/11;PseHum1.0;Beijing Genomics Institute (BGI)-Shenzhen;GCA_000331425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/425/GCF_000331425.1_PseHum1.0;;;na | 1 |
| 61221 | Varanus komodoensis | Varanidae | Squamata | Chordata | GCF_004798865.1 | 626 | 177618 | 0.3512039675949821 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM479886v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1 | GCF_004798865.1;PRJNA771140;SAMN10967258;SJPD00000000.1;representative genome;61221;61221;Varanus komodoensis;strain=SLA01;;latest;Scaffold;Major;Full;2019/04/17;ASM479886v1;Gladstone Institutes;GCA_004798865.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/865/GCF_004798865.1_ASM479886v1;;;na | 1 |
| 103944 | Protobothrops mucrosquamatus | Viperidae | Squamata | Chordata | GCF_001527695.2 | 604 | 171534 | 0.3508812696789785 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | P.Mucros_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0 | GCF_001527695.2;PRJNA313429;SAMD00043515;BCNE00000000.2;representative genome;103944;103944;Protobothrops mucrosquamatus;;PMUCROS;latest;Scaffold;Minor;Full;2016/01/22;P.Mucros_1.0;Okinawa Institute of Science and Technology;GCA_001527695.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/527/695/GCF_001527695.2_P.Mucros_1.0;;;na | 1 |
| 219594 | Aythya fuligula | Anatidae | Anseriformes | Chordata | GCF_009819795.1 | 566 | 160783 | 0.350792381731526 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | bAytFul2.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri | GCF_009819795.1;PRJNA602521;SAMN12621346;WNMM00000000.1;representative genome;219594;219594;Aythya fuligula;;bAytFul2;latest;Chromosome;Major;Full;2019/12/31;bAytFul2.pri;Vertebrate Genomes Project;GCA_009819795.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/795/GCF_009819795.1_bAytFul2.pri;;;na | 1 |
| 43150 | Hirundo rustica | Hirundinidae | Passeriformes | Chordata | GCF_015227805.1 | 577 | 163915 | 0.3507769374802422 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | bHirRus1.pri.v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2 | GCF_015227805.1;PRJNA713843;SAMN14675488;JADDRP000000000.2;representative genome;43150;43150;Hirundo rustica;;bHirRus1;latest;Chromosome;Major;Full;2021/03/02;bHirRus1.pri.v2;Vertebrate Genomes Project;GCA_015227805.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/805/GCF_015227805.1_bHirRus1.pri.v2;;;na | 1 |
| 164674 | Empidonax traillii | Tyrannidae | Passeriformes | Chordata | GCF_003031625.1 | 569 | 161724 | 0.3506004571977842 | 96.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM303162v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1 | GCF_003031625.1;PRJNA516471;SAMN08663748;PWAB00000000.1;representative genome;164674;164674;Empidonax traillii;ecotype=Southwest subspecies;1590-97213;latest;Scaffold;Major;Full;2018/04/03;ASM303162v1;UCLA;GCA_003031625.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/625/GCF_003031625.1_ASM303162v1;;;na | 1 |
| 10047 | Meriones unguiculatus | Muridae | Rodentia | Chordata | GCF_002204375.1 | 656 | 186791 | 0.3499655902735173 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | MunDraft-v1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0 | GCF_002204375.1;PRJNA391923;SAMN06897401;NHTI00000000.1;representative genome;10047;10047;Meriones unguiculatus;strain=243;;latest;Scaffold;Major;Full;2017/06/21;MunDraft-v1.0;Lucigen Corp.;GCA_002204375.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/375/GCF_002204375.1_MunDraft-v1.0;;;na | 1 |
| 9999 | Urocitellus parryii | Sciuridae | Rodentia | Chordata | GCF_003426925.1 | 619 | 176328 | 0.3498222631635461 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM342692v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1 | GCF_003426925.1;PRJNA489874;SAMN09469529;QVIC00000000.1;representative genome;9999;9999;Urocitellus parryii;ecotype=Arctic tundra;AGS 11-09-20;latest;Scaffold;Major;Full;2018/08/24;ASM342692v1;UAF;GCA_003426925.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/925/GCF_003426925.1_ASM342692v1;;;na | 1 |
| 176946 | Python bivittatus | Pythonidae | Squamata | Chordata | GCF_000186305.1 | 604 | 172190 | 0.3495491741611398 | 90.2 | ["u11", "u12", "u4atac", "u6atac"] | Python_molurus_bivittatus-5.0.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2 | GCF_000186305.1;PRJNA238085;SAMN02981298;AEQU00000000.2;representative genome;176946;176946;Python bivittatus;;;latest;Scaffold;Major;Full;2013/09/15;Python_molurus_bivittatus-5.0.2;The Consortium for Comparative Genomics, UC Denver;GCA_000186305.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/305/GCF_000186305.1_Python_molurus_bivittatus-5.0.2;;;na | 1 |
| 8790 | Dromaius novaehollandiae | Dromaiidae | Casuariiformes | Chordata | GCF_003342905.1 | 565 | 161258 | 0.349146907423543 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | droNov1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1 | GCF_003342905.1;PRJNA484763;SAMN08476457;PTEY00000000.1;representative genome;8790;8790;Dromaius novaehollandiae;;6597;latest;Scaffold;Major;Full;2018/07/26;droNov1;Harvard University;GCA_003342905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/342/905/GCF_003342905.1_droNov1;;;na | 1 |
| 9778 | Trichechus manatus | Trichechidae | Sirenia | Chordata | GCF_000243295.1 | 617 | 176114 | 0.3491181513147099 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | TriManLat1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0 | GCF_000243295.1;PRJNA189960;SAMN00632092;AHIN00000000.1;representative genome;127582;9778;Trichechus manatus latirostris;;Lorelei;latest;Scaffold;Major;Full;2012/01/23;TriManLat1.0;Broad Institute;GCA_000243295.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/295/GCF_000243295.1_TriManLat1.0;;;na | 1 |
| 188344 | Leptosomus discolor | Leptosomidae | Coraciiformes | Chordata | GCF_000691785.1 | 418 | 119316 | 0.3491071875991782 | 61.2 | ["u11", "u12", "u6atac"] | ASM69178v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1 | GCF_000691785.1;PRJNA263616;SAMN02333687;JJRK00000000.1;representative genome;188344;188344;Leptosomus discolor;;BGI_N330;latest;Scaffold;Major;Full;2014/05/23;ASM69178v1;BGI;GCA_000691785.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1;;;na | 1 |
| 9715 | Mirounga leonina | Phocidae | Carnivora | Chordata | GCF_011800145.1 | 662 | 188996 | 0.349049341446182 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | KU_Mleo_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0 | GCF_011800145.1;PRJNA638103;SAMN13282320;JAAMPH000000000.1;representative genome;9715;9715;Mirounga leonina;;KUSES-001;latest;Scaffold;Major;Full;2020/03/31;KU_Mleo_1.0;Earth Biogenome Project;GCA_011800145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/800/145/GCF_011800145.1_KU_Mleo_1.0;;;na | 1 |
| 9054 | Phasianus colchicus | Phasianidae | Galliformes | Chordata | GCF_004143745.1 | 567 | 161975 | 0.3488329170306751 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM414374v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1 | GCF_004143745.1;PRJNA589599;SAMN08888240;QCWP00000000.1;representative genome;9054;9054;Phasianus colchicus;;SZU-A5-319;latest;Scaffold;Major;Full;2019/02/06;ASM414374v1;Shenzhen University;GCA_004143745.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/143/745/GCF_004143745.1_ASM414374v1;;;na | 1 |
| 9244 | Calypte anna | Trochilidae | Apodiformes | Chordata | GCF_003957555.1 | 537 | 153405 | 0.3488326772420781 | 94.9 | ["u12", "u4atac", "u6atac"] | bCalAnn1_v1.p | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p | GCF_003957555.1;PRJNA558503;SAMN02265252;RRCD00000000.1;representative genome;9244;9244;Calypte anna;;BGI_N300;latest;Chromosome;Major;Full;2019/05/16;bCalAnn1_v1.p;Vertebrate Genomes Project;GCA_003957555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/957/555/GCF_003957555.1_bCalAnn1_v1.p;;;na | 1 |
| 260995 | Geotrypetes seraphini | Dermophiidae | Gymnophiona | Chordata | GCF_902459505.1 | 657 | 187723 | 0.3487631383374031 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | aGeoSer1.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1 | GCF_902459505.1;PRJNA627137;SAMEA104387963;CABPRQ000000000.1;representative genome;260995;260995;Geotrypetes seraphini;;;latest;Chromosome;Major;Full;2019/08/18;aGeoSer1.1;SC;GCA_902459505.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.1_aGeoSer1.1;;;na | 1 |
| 8475 | Chelydra serpentina | Chelydridae | Testudines | Chordata | GCA_018859375.1 | 546 | 156074 | 0.348614480909207 | 91.4 | ["u11", "u12", "u4atac", "u6atac"] | ASM1885937v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1 | GCA_018859375.1;PRJNA574487;SAMN13981802;JAHGAV000000000.1;representative genome;8475;8475;Chelydra serpentina;;KW;latest;Scaffold;Major;Full;2021/06/11;ASM1885937v1;University of North Dakota;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/859/375/GCA_018859375.1_ASM1885937v1;;;na | 1 |
| 30611 | Otolemur garnettii | Galagidae | Primates | Chordata | GCF_000181295.1 | 617 | 176440 | 0.3484753497461269 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | OtoGar3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3 | GCF_000181295.1;PRJNA169348;SAMN02981229;AAQR00000000.3;representative genome;30611;30611;Otolemur garnettii;;467f Iridium;latest;Scaffold;Major;Full;2011/03/16;OtoGar3;Broad Institute of MIT and Harvard, USA, Cambridge;GCA_000181295.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/181/295/GCF_000181295.1_OtoGar3;;;na | 1 |
| 40151 | Monodon monoceros | Monodontidae | Artiodactyla | Chordata | GCF_005190385.1 | 624 | 178652 | 0.348066668154131 | 99.6 | ["u11", "u12", "u4atac", "u6atac"] | NGI_Narwhal_1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1 | GCF_005190385.1;PRJNA542700;SAMN10872456;SIHG00000000.1;representative genome;40151;40151;Monodon monoceros;ecotype=Baffin Bay Population;NGI;latest;Scaffold;Major;Full;2019/05/06;NGI_Narwhal_1;The Narwhal Genome Initiative;GCA_005190385.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/190/385/GCF_005190385.1_NGI_Narwhal_1;;;na | 1 |
| 185453 | Chrysochloris asiatica | Chrysochloridae | Chordata | GCF_000296735.1 | 623 | 178592 | 0.3476271517451106 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | ChrAsi1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0 | GCF_000296735.1;PRJNA232768;SAMN00744889;AMDV00000000.1;representative genome;185453;185453;Chrysochloris asiatica;;;latest;Scaffold;Major;Full;2012/09/19;ChrAsi1.0;Broad Institute;GCA_000296735.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/296/735/GCF_000296735.1_ChrAsi1.0;;;na | 1 | |
| 118797 | Lipotes vexillifer | Lipotidae | Artiodactyla | Chordata | GCF_000442215.1 | 606 | 173778 | 0.3475089457748417 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | Lipotes_vexillifer_v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1 | GCF_000442215.1;PRJNA232751;SAMN02953859;AUPI00000000.1;representative genome;118797;118797;Lipotes vexillifer;;;latest;Scaffold;Major;Full;2013/07/31;Lipotes_vexillifer_v1;BGI;GCA_000442215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/215/GCF_000442215.1_Lipotes_vexillifer_v1;;;na | 1 |
| 91951 | Catharus ustulatus | Turdidae | Passeriformes | Chordata | GCF_009819885.2 | 608 | 174426 | 0.3473610841322257 | 100.0 | ["u11", "u12", "u4atac", "u6atac"] | bCatUst1.pri.v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2 | GCF_009819885.2;PRJNA613294;SAMN12618602;WNMQ00000000.2;representative genome;91951;91951;Catharus ustulatus;;bCatUst1;latest;Chromosome;Major;Full;2020/12/22;bCatUst1.pri.v2;Vertebrate Genomes Project;GCA_009819885.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/819/885/GCF_009819885.2_bCatUst1.pri.v2;;;na | 1 |
| 30331 | Bufo gargarizans | Bufonidae | Anura | Chordata | GCF_014858855.1 | 699 | 200536 | 0.3473550823663875 | 94.9 | ["u11", "u12", "u4atac", "u6atac"] | ASM1485885v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1 | GCF_014858855.1;PRJNA769289;SAMN14734018;JABFFT000000000.1;representative genome;30331;30331;Bufo gargarizans;;SCDJY-AF-19;latest;Chromosome;Major;Full;2020/10/21;ASM1485885v1;Chengdu Institute of Biology, CAS;GCA_014858855.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/858/855/GCF_014858855.1_ASM1485885v1;;;na | 1 |
| 7868 | Callorhinchus milii | Callorhinchidae | Chimaeriformes | Chordata | GCF_018977255.1 | 606 | 173861 | 0.3473436237225377 | 92.5 | ["u11", "u12", "u4atac", "u6atac"] | IMCB_Cmil_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0 | GCF_018977255.1;PRJNA744271;SAMN12905446;WEZY00000000.1;representative genome;7868;7868;Callorhinchus milii;;IMCB2004;latest;Scaffold;Major;Full;2021/06/21;IMCB_Cmil_1.0;Institute of Molecular and Cell Biology, A*star, Singapore;GCA_018977255.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/977/255/GCF_018977255.1_IMCB_Cmil_1.0;;;na | 1 |
| 9707 | Odobenus rosmarus | Odobenidae | Carnivora | Chordata | GCF_000321225.1 | 620 | 177897 | 0.3473058588257701 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | Oros_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0 | GCF_000321225.1;PRJNA189954;SAMN01180787;ANOP00000000.1;representative genome;9708;9707;Odobenus rosmarus divergens;;Ivan;latest;Scaffold;Major;Full;2013/01/16;Oros_1.0;Marine mammals;GCA_000321225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/321/225/GCF_000321225.1_Oros_1.0;;;na | 1 |
| 13397 | Carcharodon carcharias | Alopiidae | Lamniformes | Chordata | GCF_017639515.1 | 663 | 190347 | 0.3471022459557091 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | sCarCar2.pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri | GCF_017639515.1;PRJNA725502;SAMN12629504;JAGDEE000000000.1;representative genome;13397;13397;Carcharodon carcharias;;sCarCar2;latest;Chromosome;Major;Full;2021/03/30;sCarCar2.pri;Vertebrate Genomes Project;GCA_017639515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/639/515/GCF_017639515.1_sCarCar2.pri;;;na | 1 |
| 189058 | Neophocaena asiaeorientalis | Phocoenidae | Artiodactyla | Chordata | GCF_003031525.2 | 618 | 177478 | 0.3470038630850777 | 98.4 | ["u11", "u12", "u4atac", "u6atac"] | Neophocaena_asiaeorientalis_V1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1 | GCF_003031525.2;PRJNA449518;SAMN05831577;MKKW00000000.1;representative genome;1706337;189058;Neophocaena asiaeorientalis asiaeorientalis;breed=wild;;latest;Scaffold;Minor;Full;2018/04/03;Neophocaena_asiaeorientalis_V1;Nanjing normal university;GCA_003031525.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/031/525/GCF_003031525.2_Neophocaena_asiaeorientalis_V1;;;na | 1 |
| 9417 | Artibeus jamaicensis | Phyllostomidae | Chiroptera | Chordata | GCF_014825515.1 | 640 | 183874 | 0.3468571490510205 | 98.0 | ["u11", "u12", "u4atac", "u6atac"] | WHU_Ajam_v2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2 | GCF_014825515.1;PRJNA673233;SAMN12273914;VSFN00000000.1;representative genome;9417;9417;Artibeus jamaicensis;;1a;latest;Scaffold;Major;Full;2020/09/30;WHU_Ajam_v2;College of Life Sciences at Wuhan University;GCA_014825515.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/825/515/GCF_014825515.1_WHU_Ajam_v2;;;na | 1 |
| 9627 | Vulpes vulpes | Canidae | Carnivora | Chordata | GCF_003160815.1 | 637 | 183035 | 0.3468138856221961 | 99.2 | ["u11", "u12", "u4atac", "u6atac"] | VulVul2.2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2 | GCF_003160815.1;PRJNA482864;SAMN06553695;NBDQ00000000.1;representative genome;9627;9627;Vulpes vulpes;strain=TameXAggressive cross;;latest;Scaffold;Major;Full;2018/05/25;VulVul2.2;University of Illinois at Urbana-Champaign;GCA_003160815.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/160/815/GCF_003160815.1_VulVul2.2;;;na | 1 |
| 328815 | Manacus vitellinus | Pipridae | Passeriformes | Chordata | GCF_001715985.3 | 519 | 149246 | 0.3465429172370046 | 87.5 | ["u12", "u4atac", "u6atac"] | ASM171598v3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3 | GCF_001715985.3;PRJNA341382;SAMN02299332;MCBO00000000.3;representative genome;328815;328815;Manacus vitellinus;;BGI_N305;latest;Scaffold;Major;Full;2019/07/03;ASM171598v3;Smithsonian Institution National Museum of Natural History;GCA_001715985.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/715/985/GCF_001715985.3_ASM171598v3;;;na | 1 |
| 44394 | Zonotrichia albicollis | Passerellidae | Passeriformes | Chordata | GCF_000385455.1 | 502 | 144378 | 0.3464936499171728 | 75.7 | ["u11", "u12", "u6atac"] | Zonotrichia_albicollis-1.0.1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1 | GCF_000385455.1;PRJNA217032;SAMN02981528;ARWJ00000000.1;representative genome;44394;44394;Zonotrichia albicollis;;Tan morph;latest;Scaffold;Major;Full;2013/04/30;Zonotrichia_albicollis-1.0.1;White-throated sparrow consortium;GCA_000385455.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1;;;na | 1 |
| 37029 | Prionailurus bengalensis | Felidae | Carnivora | Chordata | GCF_016509475.1 | 663 | 190686 | 0.3464873085304862 | 98.8 | ["u11", "u12", "u4atac", "u6atac"] | Fcat_Pben_1.1_paternal_pri | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/509/475/GCF_016509475.1_Fcat_Pben_1.1_paternal_pri | GCF_016509475.1;PRJNA756971;SAMN16486448;JADZGN000000000.1;representative genome;37029;37029;Prionailurus bengalensis;;Pbe53;latest;Chromosome;Major;Full;2021/01/06;Fcat_Pben_1.1_paternal_pri;Texas A&M University;GCA_016509475.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/509/475/GCF_016509475.1_Fcat_Pben_1.1_paternal_pri;;;na | 1 |
The Where the Minor Things Are (WtMTA) intron database contains information about introns in > 1500 species identified by Larue & Roy, 2023 as containing minor introns, with a total of more than 250 million rows. The data includes intron information such as type classification (major or minor), phase, genomic coordinates, etc. for all annotated introns included in our analyses, as well as additional metadata about parent genes, transcripts, and genomes.
Intron classifications were generated using intronIC, and other intron-based metadata (introns per kbps coding sequence, etc.) was obtained using custom Python workflows. All substrate data was sourced from publicly-available genomic resources such as NCBI, Ensembl and JGI.
Exploring the database
Unless you are interested in the entirety of the data (see the section on running the database locally), the best place to start exploring may be via the
genomestable. There, you can select a species of interest and drill down to the associated introns and/or transcripts for further filtering.The results of any query can be downloaded in a number of plaintext formats (e.g., CSV), provided they don’t exceed 1 GB (see
Advanced Exportbelow the paginated results; selectstream all rowsto ensure the full dataset is returned). This should be sufficient to retrieve, for example, the complete intron/transcript set for any individual genome, or a subset of introns/transcripts across a number of different genomes.Searching within tables
The
genomesandtranscriptstable provide limited search functionality, allowing for queries of complete words only (i.e., no wildcards). For example, to return information about all cnidarian genomes, thegenomestable should be searched forcnidaria, but not (for example)cnidar*.Obtaining a local copy of the DB
The SQLite database file was created using sqlite-utils and Datasette.
You are free to download the entire WtMTA database file via the link at the bottom of this page. After doing so, you can recreate most of the functionality of this website on a local computer/server.
To explore a local version of this database using Datasette, first install Datasette:
Then, run Datasette with the SQLite database file:
This command will start a local web server (the default URL will be displayed by Datasette automatically), and you can explore the database interactively using your web browser. See Datasette’s documentation for details and additional options.