WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 9992777

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
54888817	GT-AG	1.000000099473604e-05	1276	rna-XM_009564207.1 9992777	1	1889938	1891213	Cuculus canorus 55661	AAG\|GTAATGCTGG...TATTTCTTTGTT/GCAGAGGTAACC...CTCAG\|ATG	1	1	3.588
54888818	GT-AG	1.000000099473604e-05	412	rna-XM_009564207.1 9992777	2	1891364	1891775	Cuculus canorus 55661	TGG\|GTAAATACAC...TTTTCCTTTTTT/GTGCAGATAACA...AACAG\|GTG	1	1	13.372
54888819	GT-AG	1.000000099473604e-05	2589	rna-XM_009564207.1 9992777	3	1891944	1894532	Cuculus canorus 55661	TAG\|GTACAGGATT...ATCATCTTAGAC/CTGGAATTAATC...TACAG\|GAG	1	1	24.331
54888820	GT-AG	0.0033799241762676	882	rna-XM_009564207.1 9992777	4	1894701	1895582	Cuculus canorus 55661	TTG\|GTATGTGTTT...TCTCTTTTATTT/TTCTCTTTTATT...CCCAG\|CTG	1	1	35.29
54888821	GT-AG	1.000000099473604e-05	769	rna-XM_009564207.1 9992777	5	1895751	1896519	Cuculus canorus 55661	TAG\|GTTAGACTTT...GCTTCCTTTTCC/CAGCCAGTGACC...TTCAG\|ACA	1	1	46.249
54888822	GT-AG	1.000000099473604e-05	1113	rna-XM_009564207.1 9992777	6	1896688	1897800	Cuculus canorus 55661	TGT\|GTAAGGGACA...TTGTTCTGGATC/GGCTGTCTAATA...CATAG\|CCC	1	1	57.208
54888823	GT-AG	1.000000099473604e-05	1177	rna-XM_009564207.1 9992777	7	1897969	1899145	Cuculus canorus 55661	TAG\|GTAGGAATGT...TTTCTCTTAGTA/CTGGTCTTAATC...TTCAG\|CTG	1	1	68.167
54888824	GT-AG	1.000000099473604e-05	1150	rna-XM_009564207.1 9992777	8	1899314	1900463	Cuculus canorus 55661	TAA\|GTAAGTATAG...GATGTGTTAGTT/GTGCCTGTTATT...TGCAG\|CAC	1	1	79.126

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);