WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 9887128

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
54167330	GT-AG	1.000000099473604e-05	1730	rna-XM_039350105.1 9887128	1	1886137	1887866	Crotalus tigris 88082	TCT\|GTGAGTGAGG...ATTCTTTTATCA/ATTATGCTAACT...TCTAG\|TAA	1	1	31.584
54167331	GT-AG	1.000000099473604e-05	1649	rna-XM_039350105.1 9887128	2	1884361	1886009	Crotalus tigris 88082	CAG\|GTAAGGAAAT...GCAGGCTTAATA/CCTGTATTTATT...TGCAG\|TTG	2	1	43.278
54167332	GT-AG	1.000000099473604e-05	15801	rna-XM_039350105.1 9887128	3	1868457	1884257	Crotalus tigris 88082	CAG\|GTAAGAAGTT...ATTTTCTTTTTT/CCAGAATTAAGG...TGCAG\|GCC	0	1	52.762
54167333	GT-AG	1.402048353036292e-05	6921	rna-XM_039350105.1 9887128	4	1861440	1868360	Crotalus tigris 88082	ATG\|GTAAGTTATT...GTACTTTTATAT/ATTGCTGTCATT...CTCAG\|AAT	0	1	61.602
54167334	GT-AG	1.2875398262196782e-05	4293	rna-XM_039350105.1 9887128	5	1857044	1861336	Crotalus tigris 88082	TGC\|GTAAGTCTAA...TGTATTTTCTCC/GTAAAATTAATT...TTCAG\|CTT	1	1	71.087
54167335	GT-AG	2.2798461143018784e-05	437	rna-XM_039350105.1 9887128	6	1856517	1856953	Crotalus tigris 88082	CAG\|GTAAATTATC...AATCCCTTAAGT/TTTTTTCTCATT...CACAG\|AAT	1	1	79.374
54167336	GT-AG	1.000000099473604e-05	2198	rna-XM_039350105.1 9887128	7	1854180	1856377	Crotalus tigris 88082	CAG\|GTAATAAGGC...GCTTCCTTTTTT/AAACAAATAAAT...TTTAG\|AGG	2	1	92.173
54167337	GT-AG	0.0001438612555548	3099	rna-XM_039350105.1 9887128	8	1851037	1854135	Crotalus tigris 88082	ATA\|GTAAGTAACT...TTTTTCTTGACT/GATATTTTCATT...TTCAG\|ATG	1	1	96.225

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);