WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 9887110

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
54167210	GT-AG	1.000000099473604e-05	14558	rna-XM_039338038.1 9887110	1	4194617	4209174	Crotalus tigris 88082	AGG\|GTGAGCTTCG...GTTTCTTTTTCA/TTCTTTTTCAGT...TCTAG\|GTC	1	1	33.946
54167211	GT-AG	1.7601360836059867e-05	553	rna-XM_039338038.1 9887110	2	4209275	4209827	Crotalus tigris 88082	CAG\|GTAAACAAGA...TACTTTTTGATA/GTTGTTTTCATC...TTTAG\|ATT	2	1	40.748
54167212	GT-AG	1.000000099473604e-05	12180	rna-XM_039338038.1 9887110	3	4210033	4222212	Crotalus tigris 88082	CAG\|GTGAGTTTAT...TTTTCCTTATCT/TTTTTCCTTATC...TGCAG\|AGG	0	1	54.694
54167213	GT-AG	1.000000099473604e-05	1824	rna-XM_039338038.1 9887110	4	4222408	4224231	Crotalus tigris 88082	AAT\|GTAGGACATG...TATTTCTAAATC/ATATTTCTAAAT...TACAG\|TAT	0	1	67.959
54167214	GT-AG	1.000000099473604e-05	451	rna-XM_039338038.1 9887110	5	4224265	4224715	Crotalus tigris 88082	CTG\|GTAAGTATTT...GCTTACTTAACT/TTTATGCTTACT...TACAG\|GAT	0	1	70.204
54167215	GT-AG	0.0005019491301293	2010	rna-XM_039338038.1 9887110	6	4224831	4226840	Crotalus tigris 88082	AAG\|GTATTGTACT...TTTTCCTTCTTT/TACAAATTAATG...AACAG\|GAA	1	1	78.027
54167216	GT-AG	0.0001911643877347	3888	rna-XM_039338038.1 9887110	7	4226899	4230786	Crotalus tigris 88082	GGG\|GTAGGTTTAA...ATGTTCTTACTA/TATGTTCTTACT...TCTAG\|TAA	2	1	81.973
54167217	GT-AG	0.0001127001484608	2596	rna-XM_039338038.1 9887110	8	4230883	4233478	Crotalus tigris 88082	GAT\|GTAAGTTAAA...AGTTTCTTATTA/AAGTTTCTTATT...TTCAG\|AGG	2	1	88.503

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);