WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 94446

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
498313	GT-AG	0	1.000000099473604e-05	3576	rna-XM_009072147.1 94446	2	16826	20401	Acanthisitta chloris 57068	AAG\|GTAAGTGGTG...TAGCTCTTACTG/TTGATTTTTACT...TTTAG\|GCA	0	1	17.991
498314	GT-AG	0	1.000000099473604e-05	14052	rna-XM_009072147.1 94446	3	20606	34657	Acanthisitta chloris 57068	GAG\|GTTGGTGGCA...CTTTCCTTTTTT/TACAATTTAACA...TGAAG\|GAC	0	1	35.808
498315	GT-AG	0	1.000000099473604e-05	3134	rna-XM_009072147.1 94446	4	34781	37914	Acanthisitta chloris 57068	AAG\|GTATGAAAAT...CCTGTCTTGTCT/CTTGTCTTTAAT...CTCAG\|AGC	0	1	46.55
498316	GT-AG	0	3.773106427620185e-05	6190	rna-XM_009072147.1 94446	5	37992	44181	Acanthisitta chloris 57068	GAG\|GTATGAAATT...ATGTACTTGATT/ATGTACTTGATT...TTCAG\|ACA	2	1	53.275
498317	GT-AG	0	1.6918431120680313e-05	1376	rna-XM_009072147.1 94446	6	44291	45666	Acanthisitta chloris 57068	AAG\|GTAACATCCT...CAACTTATAGTT/AAACAACTTATA...GACAG\|GAT	0	1	62.795
498318	GT-AG	1	99.5724311857867	672	rna-XM_009072147.1 94446	7	45801	46472	Acanthisitta chloris 57068	ACC\|GTATCCTTTA...TGTTCCCTAACC/TGTTCCCTAACC...AACAG\|ACA	2	1	74.498
498319	GT-AG	0	1.1764060233214153e-05	384	rna-XM_009072147.1 94446	8	46669	47052	Acanthisitta chloris 57068	AAT\|GTAAGTGTTG...AATGCTTTGAGT/CTTTGAGTTATT...TTCAG\|TCT	0	1	91.616
498320	GT-AG	0	1.000000099473604e-05	9698	rna-XM_009072147.1 94446	1	6945	16642	Acanthisitta chloris 57068	CTG\|GTAGGACTCT...GACTTTTTAAAT/GAATTTCTAATG...TCTAG\|GTG		0	8.559

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);