WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 94416

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
497979	GT-AG	2.9045608406093823e-05	923	rna-XM_009084401.1 94416	1	11455	12377	Acanthisitta chloris 57068	TAC\|GTAAGTATGA...TTACTTTTAAAA/GAGATTCTCATC...TTTAG\|GAT	0	1	11.18
497980	GT-AG	1.000000099473604e-05	393	rna-XM_009084401.1 94416	2	10930	11322	Acanthisitta chloris 57068	CTG\|GTAAGTTAAC...TAATTTTTACCT/GTAATTTTTACC...TTTAG\|GAC	0	1	22.893
497981	GT-AG	1.000000099473604e-05	111	rna-XM_009084401.1 94416	3	10705	10815	Acanthisitta chloris 57068	AAG\|GTGAGTTTAT...ACCCCTGTGACC/CCAGGATTTACC...CCTAG\|GCG	0	1	33.008
497982	GT-AG	0.0774472413869775	81	rna-XM_009084401.1 94416	4	10507	10587	Acanthisitta chloris 57068	ATT\|GTATGTCTCA...GTTTTTTTGACG/GTTTTTTTGACG...TAAAG\|GAT	0	1	43.39
497983	GT-AG	1.000000099473604e-05	417	rna-XM_009084401.1 94416	5	10005	10421	Acanthisitta chloris 57068	CTA\|GTAAGTCAAA...AAGGTTTGAACT/CTTTGTATCATT...TTCAG\|AAA	1	1	50.932
497984	GT-AG	0.001814680631063	1655	rna-XM_009084401.1 94416	6	8232	9886	Acanthisitta chloris 57068	CGA\|GTAAGTTTTC...GTGTTTTTAATG/GTGTTTTTAATG...TGCAG\|TGC	2	1	61.402
497985	GT-AG	3.2012206774725696e-05	506	rna-XM_009084401.1 94416	7	7557	8062	Acanthisitta chloris 57068	TAT\|GTAAGTCTGG...GTCTCATTATTG/TTGGGCCTCAGT...TTTAG\|ATT	0	1	76.398
497986	GT-AG	1.000000099473604e-05	1110	rna-XM_009084401.1 94416	8	6330	7439	Acanthisitta chloris 57068	AAT\|GTAAGTAAAA...AAAGCTTTGCCT/CATAGGTTAAAT...AACAG\|GAG	0	1	86.779

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);