WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 9148314

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
49648263	GT-AG	0.8551549372899289	52	rna-gnl\|WGS:JXYT\|CONCODRAFT_mRNA88346 9148314	2	92181	92232	Conidiobolus coronatus 34488	AT\|GTAATTTCAG...GTATATTTAATT/ATTTAATTAATT...TATAG\|GAT	2	1	6.04
49648264	GT-AG	5.879889015743607e-05	48	rna-gnl\|WGS:JXYT\|CONCODRAFT_mRNA88346 9148314	3	92583	92630	Conidiobolus coronatus 34488	ACT\|GTAATTCAAT...TATACTTTACTA/ACTTTACTAATT...TCTAG\|CTT	1	1	45.19
49648265	GT-AG	2.226339575416461e-05	53	rna-gnl\|WGS:JXYT\|CONCODRAFT_mRNA88346 9148314	4	92696	92748	Conidiobolus coronatus 34488	AAA\|GTAAAATATA...TAGTCGTTAACA/ATATAACTAATA...ACTAG\|AAA	0	1	52.461
49648266	GT-AG	5.1027171468902e-05	47	rna-gnl\|WGS:JXYT\|CONCODRAFT_mRNA88346 9148314	5	92863	92909	Conidiobolus coronatus 34488	TTA\|GTAATTGTAT...ATTATTTTAAAC/TTTAAACTAACA...AATAG\|CTT	0	1	65.213
49648302	GT-AG	0.0001131826177493	47	rna-gnl\|WGS:JXYT\|CONCODRAFT_mRNA88346 9148314	1	92033	92079	Conidiobolus coronatus 34488	TTA\|GTAATTTAAC...TAGTTATTATCA/ATCAACCTAACT...CATAG\|AGC		0	5.817
49648303	GT-AG	0.0001351001052789	48	rna-gnl\|WGS:JXYT\|CONCODRAFT_mRNA88346 9148314	6	93192	93239	Conidiobolus coronatus 34488	AAA\|GTAGTTTTAA...AGTATATTAAAT/AGTATATTAAAT...ACTAG\|GTT		0	96.756

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);