introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 9129065

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
49484314 GT-AG 0 1.000000099473604e-05 34383 rna-XM_004673634.2 9129065 2 29813353 29847735 Condylura cristata 143302 CAG|GTAGAGTCAA...ACCGTCTTACCT/ATGATATTTATG...TGCAG|GCC 0 1 17.086
49484315 GT-AG 0 1.000000099473604e-05 4258 rna-XM_004673634.2 9129065 3 29808921 29813178 Condylura cristata 143302 GAG|GTAAAAACAA...AAGCTCTTCCCA/AAAATGTTAAGC...CTCAG|TTG 0 1 21.376
49484316 GT-AG 0 0.0002606671562109 33661 rna-XM_004673634.2 9129065 4 29775081 29808741 Condylura cristata 143302 GAG|GTAACGTGCA...TATCTCTTGTTT/ACATATATAACA...CCTAG|ATT 2 1 25.789
49484317 GT-AG 0 1.000000099473604e-05 3735 rna-XM_004673634.2 9129065 5 29768540 29772274 Condylura cristata 143302 TTG|GTGAGTGGCA...GTGTCTTTATAT/CGTGTCTTTATA...TACAG|TCA 0 1 94.97
49488659 GT-AG 0 1.000000099473604e-05 76537 rna-XM_004673634.2 9129065 1 29848015 29924551 Condylura cristata 143302 CAG|GTAAGACTAA...TTTTTTTTCATG/TTTTTTTTCATG...TGTAG|GTG   0 10.355

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);