introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 9114904
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
49389892 | GT-AG | 0 | 1.000000099473604e-05 | 108 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 1 | 2864290 | 2864397 | Columbina picui 115618 | CAG|GTTGGTGCCA...ACGGCCCTGCCC/GGCTGGTTCACA...GGCAG|GCA | 1 | 1 | 6.915 |
49389893 | GT-AG | 0 | 1.000000099473604e-05 | 389 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 2 | 2864549 | 2864937 | Columbina picui 115618 | GAG|GTGAGTTCAT...GGTCCCTTAGCA/AGGTCCCTTAGC...CGCAG|GCA | 2 | 1 | 16.765 |
49389894 | GT-AG | 0 | 1.000000099473604e-05 | 73 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 3 | 2865042 | 2865114 | Columbina picui 115618 | AAG|GTAGGAGCTG...TTCCCTTTAGTA/CACTGTTTCATT...TACAG|GTG | 1 | 1 | 23.549 |
49389895 | GT-AG | 0 | 1.000000099473604e-05 | 478 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 4 | 2865172 | 2865649 | Columbina picui 115618 | ATG|GTGAGTTTAA...TGTCCCTTGCTG/CCCTTGCTGATG...TGCAG|AGG | 1 | 1 | 27.267 |
49389896 | GT-AG | 0 | 1.000000099473604e-05 | 83 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 5 | 2865799 | 2865881 | Columbina picui 115618 | CAG|GTGTGTATCT...TGATCATGGACC/TCGTTGCTGATC...CCCAG|GAG | 0 | 1 | 36.986 |
49389897 | GT-AG | 0 | 0.0002512323836692 | 754 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 6 | 2866049 | 2866802 | Columbina picui 115618 | CCG|GTACTACTGC...CTTTCCTTACCT/TCTTTCCTTACC...TCCAG|CCT | 2 | 1 | 47.88 |
49389898 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 7 | 2867128 | 2867197 | Columbina picui 115618 | CAG|GTGGGTGCTG...GGGGCCTTGAGG/TCTCCACTGACT...CCCAG|GAG | 0 | 1 | 69.08 |
49389899 | GT-AG | 0 | 1.000000099473604e-05 | 105 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 8 | 2867284 | 2867388 | Columbina picui 115618 | GAA|GTAAGCAGCT...AGGACCATGGTG/ACCTGGCTGATG...TGCAG|GTA | 2 | 1 | 74.69 |
49389900 | GT-AG | 0 | 0.0004260877812827 | 166 | rna-gnl|WGS:VYZG|COLPIC_R04113_mrna 9114904 | 9 | 2867551 | 2867716 | Columbina picui 115618 | CAG|GTACCATCAC...CCTGTTCTGACT/CCTGTTCTGACT...TGCAG|GGA | 2 | 1 | 85.258 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);