WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 9114900

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
49389855	GT-AG	1.000000099473604e-05	90613	rna-gnl\|WGS:VYZG\|COLPIC_R00043_mrna 9114900	1	729528	820140	Columbina picui 115618	AAG\|GTACGGCTCG...TTTTTATTAATC/TTTTTATTAATC...TTCAG\|ATT	1	1	4.953
49389856	GT-AG	1.000000099473604e-05	2304	rna-gnl\|WGS:VYZG\|COLPIC_R00043_mrna 9114900	2	726982	729285	Columbina picui 115618	AAG\|GTGAGTAAAT...GTGTTGTTATTG/AGTGTTGTTATT...TGCAG\|ATC	0	1	19.056
49389857	GT-AG	1.000000099473604e-05	38002	rna-gnl\|WGS:VYZG\|COLPIC_R00043_mrna 9114900	3	688658	726659	Columbina picui 115618	TAG\|GTGAGTAGCT...GACCCCTTTTTT/TTTTCTCTGAAG...CGCAG\|ACA	1	1	37.821
49389858	GT-AG	0.0005951218576228	14455	rna-gnl\|WGS:VYZG\|COLPIC_R00043_mrna 9114900	4	673522	687976	Columbina picui 115618	TGG\|GTATGTCAGA...AAATTTTTAAAA/AAATTTTTAAAA...TGCAG\|GTT	1	1	77.506
49389859	GT-AG	1.000000099473604e-05	1288	rna-gnl\|WGS:VYZG\|COLPIC_R00043_mrna 9114900	5	672087	673374	Columbina picui 115618	GTG\|GTAAGAGTGG...CTGTTCTTTGTG/ACATGAGTGACC...TTCAG\|GCA	1	1	86.072

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);