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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

23 rows where transcript_id = 9114878

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
49389555 GT-AG 0 0.0009635482224958 1377 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 1 4329731 4331107 Columbina picui 115618 TAG|GTATTTAATG...AAAGCTTTAGTA/TTACTTTTTATG...TGCAG|GAT 1 1 6.43
49389556 GT-AG 0 0.0002048501070323 819 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 2 4328704 4329522 Columbina picui 115618 CAG|GTAAACACCT...GTACTCTTGACT/GTACTCTTGACT...TTTAG|ATT 2 1 13.469
49389557 GT-AG 0 1.000000099473604e-05 3445 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 3 4325089 4328533 Columbina picui 115618 CTG|GTTTGTGAGA...GTATTGTTAACT/GTATTGTTAACT...TCCAG|GGA 1 1 19.222
49389558 GT-AG 0 1.000000099473604e-05 2481 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 4 4322485 4324965 Columbina picui 115618 GAG|GTGAGTTTTA...ATGTTTTTTCCA/AGAATTGTCACA...TCTAG|AGT 1 1 23.384
49389559 GT-AG 0 0.0006525053083113 431 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 5 4321941 4322371 Columbina picui 115618 CGG|GTATGTATAG...ATCTCTTTGTTT/CTTTTGTTTATG...CCCAG|CAA 0 1 27.208
49389560 GT-AG 0 1.000000099473604e-05 473 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 6 4321305 4321777 Columbina picui 115618 AAG|GTAAGTTCTT...TTTATTTTGATT/TTTATTTTGATT...CATAG|GAT 1 1 32.724
49389561 GT-AG 0 1.000000099473604e-05 540 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 7 4320672 4321211 Columbina picui 115618 TTC|GTAAGTGAAG...TTTTTCTTTGTG/GAATTAGTAAGC...TCCAG|TGC 1 1 35.871
49389562 GT-AG 0 3.7102849902966064e-05 1491 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 8 4319089 4320579 Columbina picui 115618 AAG|GTACAGTGAT...TTGTCTTTAATA/TTGTCTTTAATA...CCTAG|GAT 0 1 38.985
49389563 GT-AG 0 1.000000099473604e-05 2869 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 9 4316139 4319007 Columbina picui 115618 CAT|GTAAGTGTGT...TTTTGTTTAATT/TTTTGTTTAATT...TATAG|TAT 0 1 41.726
49389564 GT-AG 0 1.000000099473604e-05 8004 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 10 4308031 4316034 Columbina picui 115618 TCG|GTAAGTTAAA...TGTCTCTTTGTT/CTTGTACTCATT...TTCAG|AGT 2 1 45.245
49389565 GT-AG 0 1.000000099473604e-05 986 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 11 4306951 4307936 Columbina picui 115618 GAA|GTCATTAAGG...GTAACCTCATTG/CGTAACCTCATT...TCTAG|AAA 0 1 48.426
49389566 GT-AG 0 7.100688941709133e-05 892 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 12 4305936 4306827 Columbina picui 115618 AAG|GTAAGCTCTC...GATGACTTAACA/GATGACTTAACA...TGCAG|GAC 0 1 52.589
49389567 GT-AG 0 0.0015511622227164 4182 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 13 4301671 4305852 Columbina picui 115618 CAG|GTATGCAATG...ATCATTTTAAAC/GCATATTTTACT...TCCAG|CCC 2 1 55.398
49389568 GT-AG 0 5.099424112127496e-05 2716 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 14 4298810 4301525 Columbina picui 115618 TAT|GTAAGTACCC...ATTCTTTTATCT/TATTCTTTTATC...CATAG|CTT 0 1 60.305
49389569 GT-AG 0 1.000000099473604e-05 1992 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 15 4296707 4298698 Columbina picui 115618 GCG|GTAAGATACA...AGTTCTGTAATT/TTTGAACTTACT...TTTAG|TAC 0 1 64.061
49389570 GT-AG 0 1.000000099473604e-05 1745 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 16 4294841 4296585 Columbina picui 115618 ACG|GTAATGTTCT...ACTGTCTAAATA/ATGTAATTGATT...TCCAG|ATG 1 1 68.156
49389571 GT-AG 0 1.000000099473604e-05 2107 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 17 4292642 4294748 Columbina picui 115618 CAG|GTTGGTGTGA...AAATCCTTATAT/AAAATCCTTATA...TCCAG|GCT 0 1 71.269
49389572 GT-AG 0 0.0001479105945652 1104 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 18 4291426 4292529 Columbina picui 115618 ACA|GTAAGTTACA...AAAGTTTTAACT/AAAGTTTTAACT...TTTAG|GAG 1 1 75.059
49389573 GT-AG 0 0.0052010130119815 2593 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 19 4288665 4291257 Columbina picui 115618 TAG|GTACGTTTTG...TTTCTTTTAATT/TTTGTTTTAATT...CCAAG|GTT 1 1 80.745
49389574 GT-AG 0 1.000000099473604e-05 2199 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 20 4286193 4288391 Columbina picui 115618 GAG|GTAAGACAAA...TAATTTTTACTG/CTTGTTCTAATT...TGCAG|ATA 1 1 89.983
49389575 GT-AG 0 1.000000099473604e-05 1508 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 21 4284623 4286130 Columbina picui 115618 AAG|GTAAGTTAGT...AAGGGCTTGATG/GTTCTTCTCACA...TGTAG|GTG 0 1 92.081
49389576 GT-AG 0 0.0001861924092401 1825 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 22 4282725 4284549 Columbina picui 115618 CCT|GTAAGTATTG...TGGTCCTGAATT/AAGGTACTGATT...AATAG|GCC 1 1 94.552
49389577 GT-AG 0 1.000000099473604e-05 1135 rna-gnl|WGS:VYZG|COLPIC_R00025_mrna 9114878 23 4281522 4282656 Columbina picui 115618 CAG|GTAAAAAGAA...ACTTTTCTGACT/ACTTTTCTGACT...TGCAG|CCA 0 1 96.853

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.772ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)