introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 9114827
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
49389112 | GT-AG | 0 | 1.000000099473604e-05 | 24927 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 1 | 2540148 | 2565074 | Columbina picui 115618 | CAG|GTAAGCAAAT...TTTTCCTTGCCT/GCGCTGTTCATG...CCCAG|CAG | 1 | 1 | 37.037 |
49389113 | GT-AG | 0 | 0.0001228114079114 | 5392 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 2 | 2565284 | 2570675 | Columbina picui 115618 | GAG|GTAACATACT...CACTCCTTTATC/ACTAAATTAATA...TCTAG|GAT | 0 | 1 | 46.477 |
49389114 | GT-AG | 0 | 1.000000099473604e-05 | 116 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 3 | 2570762 | 2570877 | Columbina picui 115618 | CAG|GTACAATGAC...GTTTTTTTTTTT/TTAAGATTGACT...AACAG|AAA | 2 | 1 | 50.361 |
49389115 | GT-AG | 0 | 1.000000099473604e-05 | 13388 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 4 | 2570939 | 2584326 | Columbina picui 115618 | AAG|GTCTGTAAGA...TACGCTCTGATA/AGATATTTTATG...TTTAG|TGC | 0 | 1 | 53.117 |
49389116 | GT-AG | 0 | 1.000000099473604e-05 | 4363 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 5 | 2584474 | 2588836 | Columbina picui 115618 | GAG|GTAAGAATGG...TGTGCTGTATCT/TAATGTGTAACT...TGCAG|GGC | 0 | 1 | 59.756 |
49389117 | GT-AG | 0 | 1.000000099473604e-05 | 31411 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 6 | 2588965 | 2620375 | Columbina picui 115618 | CCG|GTGAGTCTTC...CCTTCATTAGTT/TATTGATTCATT...CACAG|AGA | 2 | 1 | 65.537 |
49389118 | GT-AG | 0 | 5.920209757883174e-05 | 2515 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 7 | 2620506 | 2623020 | Columbina picui 115618 | AAA|GTCAGCTGCA...TTTTTTTTAAAT/TTTTTTTTAAAT...TTCAG|ATT | 0 | 1 | 71.409 |
49389119 | GT-AG | 0 | 0.0014140955906517 | 1063 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 8 | 2623109 | 2624171 | Columbina picui 115618 | AAG|GTACCGTGTG...TGATTTTTGTTC/CAGAAATTGATT...TGCAG|TAG | 1 | 1 | 75.384 |
49389120 | GT-AG | 0 | 1.000000099473604e-05 | 480 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 9 | 2624256 | 2624735 | Columbina picui 115618 | TGG|GTAGGTAACA...TTTTCATTATCA/TTATTTTTCATT...TTTAG|GAA | 1 | 1 | 79.178 |
49389121 | GT-AG | 0 | 1.000000099473604e-05 | 785 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 10 | 2624852 | 2625636 | Columbina picui 115618 | AGA|GTAAGGCAGA...GTAGCCATGATC/ATTTGATTCATC...ACCAG|AGT | 0 | 1 | 84.417 |
49389122 | GT-AG | 0 | 1.000000099473604e-05 | 601 | rna-gnl|WGS:VYZG|COLPIC_R06817_mrna 9114827 | 11 | 2625817 | 2626417 | Columbina picui 115618 | ATG|GTAAGTGACC...GATGCTTTTGCT/ATTGGCTGCAGT...TGCAG|TTG | 0 | 1 | 92.547 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);