WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 8933542

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
48130874	GT-AG	1.000000099473604e-05	104	rna-XM_027315126.1 8933542	1	33072402	33072505	Coffea eugenioides 49369	ATG\|GTGACTACCA...TGAACCTTCACC/TGAACCTTCACC...TACAG\|GAC	0	1	2.619
48130875	GT-AG	4.778981079886755e-05	259	rna-XM_027315126.1 8933542	2	33071687	33071945	Coffea eugenioides 49369	CAG\|GTTCTTTCCC...TGCCTTTTAATT/TGTTTTATAACT...ATCAG\|CAC	0	1	13.094
48130876	GC-AG	1.000000099473604e-05	66	rna-XM_027315126.1 8933542	3	33070838	33070903	Coffea eugenioides 49369	AAG\|GCAAGGGTGA...AATATTTTCATG/AATATTTTCATG...GGTAG\|AGA	0	1	31.082
48130877	GT-AG	1.000000099473604e-05	90	rna-XM_027315126.1 8933542	4	33068792	33068881	Coffea eugenioides 49369	CAA\|GTGCGGAGCG...CTCCCCTTGAAG/TCCTTTTTTATG...TACAG\|AGA	0	1	76.017
48130878	GT-AG	1.000000099473604e-05	174	rna-XM_027315126.1 8933542	5	33068441	33068614	Coffea eugenioides 49369	CGG\|GTACGCGATA...ATTAGCTTGTCA/TAGCTTGTCATC...TCCAG\|GAT	0	1	80.083
48130879	GT-AG	0.0046033760495377	9843	rna-XM_027315126.1 8933542	6	33058180	33068022	Coffea eugenioides 49369	GAG\|GTATTCCACA...TTGTTATTAATT/TTGTTATTAATT...TGCAG\|GAC	1	1	89.685
48130880	GT-AG	0.0001715699744891	84	rna-XM_027315126.1 8933542	7	33057912	33057995	Coffea eugenioides 49369	GAT\|GTATAGAATT...AGACTCATGATG/AATAGACTCATG...TATAG\|GCA	2	1	93.912

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);