WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8594554

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
46265588	GT-AG	1.000000099473604e-05	133	rna-XM_025100060.1 8594554	1	20113533	20113665	Citrus sinensis 2711	AAG\|GTACAAGTAA...TTCTCTTTCATT/AGATTTCTGATT...TTCAG\|ATA	0	1	25.176
46265589	GT-AG	1.000000099473604e-05	92	rna-XM_025100060.1 8594554	2	20113721	20113812	Citrus sinensis 2711	TGG\|GTAAGAGAGA...GGCTCCATAACA/CGTTTTGTCATT...GACAG\|AGA	1	1	26.351
46265590	GT-AG	1.000000099473604e-05	239	rna-XM_025100060.1 8594554	3	20113989	20114227	Citrus sinensis 2711	AAG\|GTAAATCCCT...GCAATCTTGAAT/TAGCATTTGATA...TACAG\|GTT	0	1	30.109
46265591	GT-AG	1.000000099473604e-05	109	rna-XM_025100060.1 8594554	4	20114393	20114501	Citrus sinensis 2711	GAG\|GTGAGGACTA...ATGCTCTTACCT/TATGCTCTTACC...TGAAG\|GCT	0	1	33.632
46265592	GT-AG	1.000000099473604e-05	219	rna-XM_025100060.1 8594554	5	20114798	20115016	Citrus sinensis 2711	AAG\|GTAATGAGTT...TTTTCCTGAACA/ATTTTCCTGAAC...TTCAG\|GGG	2	1	39.953
46265593	GT-AG	1.000000099473604e-05	179	rna-XM_025100060.1 8594554	6	20115334	20115512	Citrus sinensis 2711	AAG\|GTAAAGATTC...TACCTGTTAAAT/TCGAGTCTCATA...GGCAG\|GAC	1	1	46.722
46265594	GT-AG	5.38605374738241e-05	114	rna-XM_025100060.1 8594554	7	20115737	20115850	Citrus sinensis 2711	CAG\|GTTTGCAACA...TCTAACTTAACT/TTCATTTTTACA...AGCAG\|GTG	0	1	51.505
46265595	GT-AG	0.0013156874693643	98	rna-XM_025100060.1 8594554	8	20117774	20117871	Citrus sinensis 2711	CAG\|GTATGCATAA...GTCTTATTGATC/GTCTTATTGATC...TATAG\|GTT	0	1	92.569

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);