WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 8594540

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
46265408	GT-AG	1.000000099473604e-05	646	rna-XM_006464218.3 8594540	3	1132462	1133107	Citrus sinensis 2711	GAG\|GTCAGTCCGA...ACATTCTTAATT/ACATTCTTAATT...TGCAG\|GGA	2	1	5.02
46265409	GT-AG	8.888052932744289	1294	rna-XM_006464218.3 8594540	4	1128107	1129400	Citrus sinensis 2711	CAG\|GTATCCTGCT...ATTTGCTTATTG/TATTTGCTTATT...CACAG\|ATG	0	1	51.03
46265410	GT-AG	1.000000099473604e-05	336	rna-XM_006464218.3 8594540	5	1125226	1125561	Citrus sinensis 2711	CTG\|GTAAGATCAC...TCATCTTTGTTG/AAAATACTCATC...TGCAG\|CTG	1	1	89.283
46265411	GT-AG	1.000000099473604e-05	220	rna-XM_006464218.3 8594540	6	1124551	1124770	Citrus sinensis 2711	AAG\|GTAAGATGCT...TGTTCTTGGATC/TTGGATCTGATC...AACAG\|ATT	0	1	96.122
46265412	GT-AG	1.000000099473604e-05	87	rna-XM_006464218.3 8594540	7	1124347	1124433	Citrus sinensis 2711	AAG\|GTAAGTTGAG...GGTTTGTTACTA/TTGTTACTAAAC...AACAG\|AGT	0	1	97.881
46275481	GT-AG	1.000000099473604e-05	673	rna-XM_006464218.3 8594540	1	1133762	1134434	Citrus sinensis 2711	AAG\|GTGAGCTCAA...GTGTTCGTATCT/TATATGTTCATT...AACAG\|GAG		0	2.315
46275482	GT-AG	0.0014596555722974	417	rna-XM_006464218.3 8594540	2	1133182	1133598	Citrus sinensis 2711	GTG\|GTACTTTTCT...TCATACTTATTT/TTCATACTTATT...TGCAG\|GAA		0	4.765

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);