WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 8392251

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
45169393	GT-AG	0.0076159198821532	150	rna-XM_004485505.3 8392251	1	994235	994384	Cicer arietinum 3827	CTC\|GTACGTTTAT...TTTTTCTCAATA/TTTTTTCTCAAT...TACAG\|AGT	1	1	7.108
45169394	GT-AG	1.000000099473604e-05	118	rna-XM_004485505.3 8392251	2	993583	993700	Cicer arietinum 3827	AAG\|GTGATATTTT...TTGCTCATATCT/AAGTTGCTCATA...TACAG\|TTG	1	1	23.261
45169395	GT-AG	1.000000099473604e-05	114	rna-XM_004485505.3 8392251	3	991814	991927	Cicer arietinum 3827	TTG\|GTTGGTCTTA...TCTGTGTTAATT/ACATTTCTAATA...TTTAG\|CTG	0	1	73.321
45169396	GT-AG	0.0004571964366877	402	rna-XM_004485505.3 8392251	4	991281	991682	Cicer arietinum 3827	TGG\|GTAGGCTAAC...TGGTCCTTACTG/ATGGTCCTTACT...TACAG\|GGA	2	1	77.284
45169397	GT-AG	4.598889408525631	639	rna-XM_004485505.3 8392251	5	990575	991213	Cicer arietinum 3827	ACG\|GTACCTTCTA...GAATCCTTAATG/AGCGTACTAATA...TTCAG\|GCA	0	1	79.31
45169398	GT-AG	0.1448420371029251	265	rna-XM_004485505.3 8392251	6	990222	990486	Cicer arietinum 3827	AAG\|GTATCGTTTC...CCATACTTAAAC/TCTTTTTTCAGT...TGCAG\|GGA	1	1	81.972
45169399	GT-AG	1.000000099473604e-05	245	rna-XM_004485505.3 8392251	7	989816	990060	Cicer arietinum 3827	CAG\|GTAGTAAACG...TAATCTTTAGCA/ATGTGAATAATC...TGCAG\|GCC	0	1	86.842
45169400	GT-AG	1.449840474714895e-05	202	rna-XM_004485505.3 8392251	8	989470	989671	Cicer arietinum 3827	CAG\|GTATGTAATC...AATTGATTGATT/AATTGATTGATT...TTCAG\|GAG	0	1	91.198
45169401	GT-AG	2.192023158311962e-05	136	rna-XM_004485505.3 8392251	9	989205	989340	Cicer arietinum 3827	CAG\|GTTTATTCTT...TTGTGCTTATGT/CTTGTGCTTATG...TGCAG\|GAA	0	1	95.1

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);