WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8392248

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
45169356	GT-AG	3.927578729396858e-05	115	rna-XM_004487625.3 8392248	1	16730495	16730609	Cicer arietinum 3827	AAG\|GTTTGTTCTT...ATTTTTTTGTTG/AAAGTTTTCATT...TGAAG\|ATG	2	1	1.775
45169357	GT-AG	0.002943195085627	372	rna-XM_004487625.3 8392248	2	16730787	16731158	Cicer arietinum 3827	AAG\|GTTTTCTTTT...TTTGCTTCATTT/TTTTGCTTCATT...TATAG\|GTT	2	1	7.1
45169358	GT-AG	7.443292107334247e-05	459	rna-XM_004487625.3 8392248	3	16731284	16731742	Cicer arietinum 3827	AAG\|GTATGGATGG...CATATCTTGATG/AAGGAATTCATA...AACAG\|GAA	1	1	10.86
45169359	GT-AG	1.000000099473604e-05	226	rna-XM_004487625.3 8392248	4	16731796	16732021	Cicer arietinum 3827	AAG\|GTTTGTAGAA...GACTCTTTCATC/AAGATATTGACT...GGCAG\|AAA	0	1	12.455
45169360	GT-AG	0.0022429523539123	80	rna-XM_004487625.3 8392248	5	16732072	16732151	Cicer arietinum 3827	CAG\|GTATATATTT...ATCTTTTTATTG/TTATTGTTTATA...TGCAG\|GGT	2	1	13.959
45169361	GT-AG	0.0006229045313702	82	rna-XM_004487625.3 8392248	6	16732305	16732386	Cicer arietinum 3827	AAG\|GTATGCAAGC...AATTTCATGACT/TATAATTTCATG...TGTAG\|GAA	2	1	18.562
45169362	GT-AG	0.0710338661422567	695	rna-XM_004487625.3 8392248	7	16732617	16733311	Cicer arietinum 3827	AAG\|GTATCATCCT...ATTATTTTGAAA/AGTATGTTAATT...TGCAG\|ATT	1	1	25.481
45169363	GT-AG	8.655869627201036e-05	135	rna-XM_004487625.3 8392248	8	16734934	16735068	Cicer arietinum 3827	AAG\|GTAAACTAAC...TAATCTTTACTT/TATTTGTTAATC...AATAG\|GAA	0	1	74.278

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);