WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 8392233

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
45169164	GT-AG	1.000000099473604e-05	2047	rna-XM_012720046.2 8392233	3	34399160	34401206	Cicer arietinum 3827	ATG\|GTAAGTTGAA...TTCCTCTTCATT/TTCCTCTTCATT...ACCAG\|GTG	0	1	12.684
45169165	GT-AG	20.274163073984905	593	rna-XM_012720046.2 8392233	4	34398130	34398722	Cicer arietinum 3827	TGG\|GTATCCCTCT...CTTATCTTACTC/GATTTACTAACT...GACAG\|GCA	2	1	23.949
45169166	GT-AG	1.000000099473604e-05	144	rna-XM_012720046.2 8392233	5	34396881	34397024	Cicer arietinum 3827	ACA\|GTAAGACTCG...ATCATATTAACT/ATCATATTAACT...AAAAG\|GGA	0	1	52.436
45169167	GT-AG	1.000000099473604e-05	93	rna-XM_012720046.2 8392233	6	34396569	34396661	Cicer arietinum 3827	AAG\|GTAAGTGGAG...TATTCTTTGATT/TTGATTTTCATT...TGCAG\|ATC	0	1	58.082
45169168	GT-AG	0.0033797968223383	252	rna-XM_012720046.2 8392233	7	34395531	34395782	Cicer arietinum 3827	CAG\|GTATTGTTTC...CTCTTTTTATTA/TCTCTTTTTATT...AACAG\|CAA	0	1	78.345
45180626	GT-AG	1.000000099473604e-05	649	rna-XM_012720046.2 8392233	1	34402234	34402882	Cicer arietinum 3827	CGG\|GTGAGTTTAA...TTTTTCTCAATT/ATTTTTCTCAAT...TGCAG\|GTA		0	3.532
45180627	GT-AG	1.000000099473604e-05	665	rna-XM_012720046.2 8392233	2	34401307	34401971	Cicer arietinum 3827	AAG\|GTAAAAATCT...TATATTTTATAT/TTATATTTTATA...TGTAG\|AAA		0	10.286

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);