WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8392225

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
45169068	GT-AG	0.1496320667034388	87	rna-XM_004488719.3 8392225	2	42483264	42483350	Cicer arietinum 3827	GAG\|GTACCATTTT...ATGTTCTTATCG/CATGTTCTTATC...CTTAG\|GTT	0	1	74.993
45169069	GT-AG	1.000000099473604e-05	985	rna-XM_004488719.3 8392225	3	42482198	42483182	Cicer arietinum 3827	CAG\|GTAAGATGTT...TTTGTTTCAGTG/ATTTAGTTCATT...TGTAG\|GTC	0	1	77.123
45169070	GT-AG	9.422588151965764e-05	91	rna-XM_004488719.3 8392225	4	42481954	42482044	Cicer arietinum 3827	CTG\|GTAACGATAA...TAATCTTTGAGA/ATGATAATGATA...TTCAG\|ACT	0	1	81.146
45169071	GT-AG	1.000000099473604e-05	357	rna-XM_004488719.3 8392225	5	42481433	42481789	Cicer arietinum 3827	TAG\|GTAATGCATA...TTTAATTTAACT/TTTAATTTAACT...TGCAG\|GTA	2	1	85.459
45169072	GT-AG	6.99276420589254e-05	91	rna-XM_004488719.3 8392225	6	42481194	42481284	Cicer arietinum 3827	AAG\|GTATTGATGC...AATGCTTTACAT/AGAAAATTAATT...TCCAG\|GTC	0	1	89.351
45169073	GT-AG	1.7649560630553296e-05	674	rna-XM_004488719.3 8392225	7	42480397	42481070	Cicer arietinum 3827	AAG\|GTAGAATTTT...TGGTTTTTGATA/TTGAATTTGATT...TGTAG\|GTT	0	1	92.585
45169074	GT-AG	0.0101847180285896	591	rna-XM_004488719.3 8392225	8	42479718	42480308	Cicer arietinum 3827	TAG\|GTACCGTCTT...GTATTCTGAATT/GGTATTCTGAAT...TGCAG\|GTG	1	1	94.899
45180621	GT-AG	1.000000099473604e-05	1011	rna-XM_004488719.3 8392225	1	42486258	42487268	Cicer arietinum 3827	TGG\|GTAAGTGAAA...GTTGTCTTGATT/GTTGTCTTGATT...TACAG\|GGA		0	4.943

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);