WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8392200

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
45168774	GT-AG	0.0003844025453846	468	rna-XM_004488985.3 8392200	2	47999863	48000330	Cicer arietinum 3827	CAG\|GTCTGTTTCT...TTTCTCTTATAC/GTTTCTCTTATA...ATCAG\|GAG	0	1	67.429
45168775	GT-AG	0.0001371555604855	468	rna-XM_004488985.3 8392200	3	47999271	47999738	Cicer arietinum 3827	AAT\|GTAAGTTTGA...TACCATTTGATT/TTGATTATGATT...AATAG\|ATC	1	1	70.211
45168776	GT-AG	7.366984518427752e-05	1695	rna-XM_004488985.3 8392200	4	47997496	47999190	Cicer arietinum 3827	GAG\|GTACTATTTC...CTAACATTATTT/ACATTATTTATT...TGCAG\|GTA	0	1	72.005
45168777	GT-AG	1.000000099473604e-05	173	rna-XM_004488985.3 8392200	5	47997081	47997253	Cicer arietinum 3827	GGG\|GTTAGTGCTT...TTCGTCTTGATT/TTCGTCTTGATT...TTCAG\|GTC	2	1	77.434
45168778	GT-AG	1.000000099473604e-05	268	rna-XM_004488985.3 8392200	6	47996726	47996993	Cicer arietinum 3827	CAG\|GTGAAACATA...TCTGCTTTATTG/ATTATTCTCAAG...TGCAG\|GGT	2	1	79.385
45168779	GT-AG	0.0052972054663486	396	rna-XM_004488985.3 8392200	7	47996230	47996625	Cicer arietinum 3827	GAG\|GTATAATTTG...ATTTCTTTCATT/ATTTCTTTCATT...AGCAG\|ATA	0	1	81.629
45168780	GT-AG	0.0015379467304385	94	rna-XM_004488985.3 8392200	8	47995946	47996039	Cicer arietinum 3827	AAG\|GTATTTTCAT...TTTGTTTTGTCG/TAGTAATTAAAA...AACAG\|GAC	1	1	85.891
45180598	GT-AG	1.000000099473604e-05	1171	rna-XM_004488985.3 8392200	1	48003063	48004233	Cicer arietinum 3827	AAG\|GTGAGGTTTT...AAGCTCTTACTG/TTTGTGTTTACT...TGCAG\|AAA		0	9.556

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);