introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8392177

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
45168399 GT-AG 0 1.000000099473604e-05 1334 rna-XM_004487482.3 8392177 1 15137202 15138535 Cicer arietinum 3827 TAG|GTGATTATGT...TTATTATTATTT/TTGATATTTATT...TCCAG|GTG 2 1 15.449
45168400 GT-AG 0 0.0873591024311261 228 rna-XM_004487482.3 8392177 2 15139190 15139417 Cicer arietinum 3827 TGT|GTATGTTCAA...TAGGTTTTAACA/TAGGTTTTAACA...TGCAG|GCT 2 1 28.725
45168401 GT-AG 0 1.000000099473604e-05 95 rna-XM_004487482.3 8392177 3 15140607 15140701 Cicer arietinum 3827 AAA|GTGAGTAATT...AATTAATTAATG/AATTAATTAATG...TTCAG|CTT 0 1 52.862
45168402 GT-AG 0 0.0014745167476314 82 rna-XM_004487482.3 8392177 4 15140979 15141060 Cicer arietinum 3827 GAG|GTATTTCTTT...ATAGTTTAAATT/AATAGTTTAAAT...AACAG|GTG 1 1 58.486
45168403 GT-AG 0 0.010942050713278 86 rna-XM_004487482.3 8392177 5 15141186 15141271 Cicer arietinum 3827 CAG|GTTCCCCTTG...GTTTATTTGATC/GTTTATTTGATC...ACCAG|GTT 0 1 61.023
45168404 GT-AG 0 1.000000099473604e-05 122 rna-XM_004487482.3 8392177 6 15141727 15141848 Cicer arietinum 3827 AAG|GTAATTACTC...TCACTCTTGAAC/CATCTATTCACT...TACAG|GAA 2 1 70.26
45168405 GT-AG 0 0.4056513320881696 720 rna-XM_004487482.3 8392177 7 15141878 15142597 Cicer arietinum 3827 AAG|GTACCCTATG...CTTGGTTTAACA/CTTGGTTTAACA...ATCAG|GTT 1 1 70.849
45168406 GT-AG 0 5.10976551487221e-05 86 rna-XM_004487482.3 8392177 8 15143084 15143169 Cicer arietinum 3827 CAA|GTAAGTTTTT...ATTATCTAATCT/AATTATCTAATC...TACAG|GGT 1 1 80.715

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);