WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8392164

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
45168084	GT-AG	0.0016122185692652	355	rna-XM_012715061.2 8392164	3	10881809	10882163	Cicer arietinum 3827	AAG\|GTACACTAGC...TTTAACTTAATA/ATTTAACTTAAT...TGCAG\|GAA	1	1	15.182
45168085	GT-AG	1.000000099473604e-05	112	rna-XM_012715061.2 8392164	4	10882367	10882478	Cicer arietinum 3827	CAA\|GTTAGTCTTC...ATTATCTTAATT/ATTATCTTAATT...GACAG\|GAA	0	1	17.718
45168086	GT-AG	0.0006223654067289	97	rna-XM_012715061.2 8392164	5	10882924	10883020	Cicer arietinum 3827	TAG\|GTATGCAAAC...ATTGCTTCAGCC/AGATACCTGATG...GGCAG\|ATT	1	1	23.279
45168087	GT-AG	0.0008803209125825	74	rna-XM_012715061.2 8392164	6	10883381	10883454	Cicer arietinum 3827	AAG\|GTATTTCAGT...CCCCCTTTGAAG/AGAATTCTAAAT...TGCAG\|ATA	1	1	27.777
45168088	GT-AG	1.000000099473604e-05	127	rna-XM_012715061.2 8392164	7	10883634	10883760	Cicer arietinum 3827	AAG\|GTGATTTTCC...TTTTCCATATAT/CATGAGCTAACT...TGCAG\|AGT	0	1	30.014
45168089	GT-AG	1.000000099473604e-05	211	rna-XM_012715061.2 8392164	8	10886734	10886944	Cicer arietinum 3827	GAG\|GTTAGTTCTG...TTTTCCTTTTTT/AAGAAATTGAAC...TTCAG\|AAT	0	1	67.162
45180560	GT-AG	6.669260062318391e-05	225	rna-XM_012715061.2 8392164	1	10880901	10881125	Cicer arietinum 3827	GAG\|GTAACTATAA...TTTATGCTGACA/TTTATGCTGACA...CACAG\|CAA		0	11.671
45180561	GT-AG	0.0010294864006728	387	rna-XM_012715061.2 8392164	2	10881205	10881591	Cicer arietinum 3827	AAG\|GTACATTTAT...ATTCCCTCAACT/TAAGTATTGATT...TACAG\|GTT		0	12.658

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);