WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8322091

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
44702374	GT-AG	0.0001291981488221	90	rna-XM_006830866.1 8322091	1	52323695	52323784	Chrysochloris asiatica 185453	CAG\|GTAACTAGAC...CCAGCCTCAGCT/ACCAGCCTCAGC...CTCAG\|ACC	1	1	14.976
44702375	GT-AG	1.000000099473604e-05	524	rna-XM_006830866.1 8322091	2	52323978	52324501	Chrysochloris asiatica 185453	AAG\|GTGAGCCCCG...GATTCCTTGCCC/CAGAGCTTTACG...CCCAG\|ACG	2	1	28.295
44702376	GT-AG	1.000000099473604e-05	167	rna-XM_006830866.1 8322091	3	52324671	52324837	Chrysochloris asiatica 185453	CAG\|GTGTGACTGG...GAGCCCAGAGCT/CCAGAGCTGAGC...CTCAG\|GGC	0	1	39.959
44702377	GT-AG	1.000000099473604e-05	129	rna-XM_006830866.1 8322091	4	52324944	52325072	Chrysochloris asiatica 185453	GGG\|GTGAGCGTTT...CAACCCTGGACA/TCTGCTCCTACC...ACCAG\|ACA	1	1	47.274
44702378	GT-AG	1.000000099473604e-05	336	rna-XM_006830866.1 8322091	5	52325127	52325462	Chrysochloris asiatica 185453	TAG\|GTAGGTCATG...GGCTCCTGAGCG/CAGTGTCTCAAG...CCCAG\|GCT	1	1	51.001
44702379	GT-AG	1.000000099473604e-05	100	rna-XM_006830866.1 8322091	6	52325714	52325813	Chrysochloris asiatica 185453	GCC\|GTGAGTAGCC...AAGACCTTAGTC/TAAGAGCTCACT...CCCAG\|CTG	0	1	68.323
44702380	GT-AG	1.000000099473604e-05	97	rna-XM_006830866.1 8322091	7	52325956	52326052	Chrysochloris asiatica 185453	TTG\|GTGAGGGTTC...ACCCCCTTACCC/AACCCCCTTACC...TCCAG\|CTC	1	1	78.123
44702381	GT-AG	1.000000099473604e-05	101	rna-XM_006830866.1 8322091	8	52326127	52326227	Chrysochloris asiatica 185453	CTG\|GTGAGAGGAC...TGTCCCTTGTCT/TCAGGACTGATG...GGCAG\|GTG	0	1	83.23

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);