introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 8322087

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
44702332 GT-AG 0 1.000000099473604e-05 228263 rna-XM_006830637.1 8322087 1 8540979 8769241 Chrysochloris asiatica 185453 AAA|GTAAGTGATG...TGTCCTTTATCT/ACTTTGCTTATT...TGCAG|CTT 0 1 19.84
44702333 GT-AG 0 0.0059241629293853 15431 rna-XM_006830637.1 8322087 2 8525392 8540822 Chrysochloris asiatica 185453 CAG|GTATGCCCCT...GTATTTTTAATC/GTATTTTTAATC...TAAAG|GTA 0 1 30.261
44702334 GT-AG 0 1.000000099473604e-05 43903 rna-XM_006830637.1 8322087 3 8481367 8525269 Chrysochloris asiatica 185453 CAG|GTGAGAATGG...CTTTTTTTTTCT/TCAAAACTAACA...TGCAG|TTT 2 1 38.41
44702335 GT-AG 0 1.000000099473604e-05 47235 rna-XM_006830637.1 8322087 4 8433899 8481133 Chrysochloris asiatica 185453 GTG|GTAAGAATTC...ATCTTTTTATTT/TTTTTATTTATT...TGCAG|TCT 1 1 53.975
44702336 GT-AG 0 1.000000099473604e-05 12789 rna-XM_006830637.1 8322087 5 8420982 8433770 Chrysochloris asiatica 185453 AAG|GTAAAACCAG...GTTTCCTTTGCC/GTGTAACTGACA...TTCAG|GTG 0 1 62.525
44702337 GT-AG 0 1.000000099473604e-05 12330 rna-XM_006830637.1 8322087 6 8408550 8420879 Chrysochloris asiatica 185453 ATG|GTAAGATGGA...GCATTTTTATCT/TTCTTTCTAAAT...CTCAG|GGT 0 1 69.339
44702338 GT-AG 0 1.000000099473604e-05 41795 rna-XM_006830637.1 8322087 7 8366588 8408382 Chrysochloris asiatica 185453 TAG|GTAAGTCATG...TTTCTCTTTTTT/ATTTTGTTGAAT...TCCAG|GTT 2 1 80.494
44702339 GT-AG 0 1.000000099473604e-05 23324 rna-XM_006830637.1 8322087 8 8343133 8366456 Chrysochloris asiatica 185453 GAG|GTAAGTCCTA...TTATTTTTAATG/TCTGTTTTTATT...TTCAG|GCT 1 1 89.245

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);