WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 7679277

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
40477461	GT-AG	1.000000099473604e-05	12214	rna-XM_030786614.1 7679277	1	5574421	5586634	Chanos chanos 29144	GAG\|GTAGAGCTCG...CTCTCTTTCTCT/CTCTTTCTCTCT...CACAG\|CTG	1	1	5.6
40477462	GT-AG	1.000000099473604e-05	4020	rna-XM_030786614.1 7679277	2	5570248	5574267	Chanos chanos 29144	GAG\|GTAAGACAGC...ATTTGTTTGACT/ATTTGTTTGACT...CACAG\|AAT	1	1	8.535
40477463	GT-AG	1.000000099473604e-05	766	rna-XM_030786614.1 7679277	3	5569357	5570122	Chanos chanos 29144	AAG\|GTAAAACCCC...CTTTCCTTTTTT/CTCTTGTCTATT...TCTAG\|CAG	0	1	10.932
40477464	GT-AG	3.532925137146979e-05	471	rna-XM_030786614.1 7679277	4	5568811	5569281	Chanos chanos 29144	AAG\|GTACAGTTAC...GTTGTCTTGGTG/CCCTGGCTAACT...CTCAG\|TCC	0	1	12.371
40477465	GT-AG	0.0001414067771269	388	rna-XM_030786614.1 7679277	5	5568230	5568617	Chanos chanos 29144	CAG\|GTAGCATCAG...GTAACCTTTGCT/AGTGTGGTAACC...ATCAG\|GGG	1	1	16.072
40477466	GT-AG	1.000000099473604e-05	512	rna-XM_030786614.1 7679277	6	5567586	5568097	Chanos chanos 29144	TAG\|GTATGACCCC...AGTCTCTTGTTG/TTTCCTCTCACG...TGCAG\|CTG	1	1	18.604
40477467	GT-AG	1.000000099473604e-05	960	rna-XM_030786614.1 7679277	7	5563110	5564069	Chanos chanos 29144	ATG\|GTAAGATTCA...TCAGACTTGATT/ACTTGATTCAGT...GTTAG\|GTA	1	1	86.038
40477468	GT-AG	1.2251665040274092e-05	1650	rna-XM_030786614.1 7679277	8	5561348	5562997	Chanos chanos 29144	TAG\|GTATGGACTT...TGTCTGTTGACC/TGTCTGTTGACC...TGCAG\|GTC	2	1	88.186

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);