WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 76513

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
347230	GT-AG	1.0360110721262702e-05	745	rna-XM_022226918.1 76513	1	2436561	2437305	Acanthaster planci 133434	CTC\|GTAAGTAAGT...TTGTCCTTTTTC/TTAAATTTCAGT...TCCAG\|AGT	1	1	24.642
347231	GT-AG	1.000000099473604e-05	409	rna-XM_022226918.1 76513	2	2437486	2437894	Acanthaster planci 133434	CAC\|GTTAGTCAAT...TGTGCTTTATTT/TTTTATTTTACG...TCTAG\|TTG	1	1	34.543
347232	GT-AG	4.752684834065712e-05	376	rna-XM_022226918.1 76513	3	2437989	2438364	Acanthaster planci 133434	CAG\|GTATTACTAA...GTACCTTTTACA/GTACCTTTTACA...GGCAG\|GCA	2	1	39.714
347233	GT-AG	1.000000099473604e-05	194	rna-XM_022226918.1 76513	4	2438524	2438717	Acanthaster planci 133434	AAC\|GTGAGTATAA...TAAGTCTGAATC/CTGAATCTCATC...ATCAG\|GTA	2	1	48.46
347234	GT-AG	1.000000099473604e-05	846	rna-XM_022226918.1 76513	5	2438927	2439772	Acanthaster planci 133434	CAG\|GTAAAAGTTC...ACATTTTTGGTT/TTTGGTTTCATC...TGTAG\|AAA	1	1	59.956
347235	GT-AG	0.000135656143601	442	rna-XM_022226918.1 76513	6	2439899	2440340	Acanthaster planci 133434	GAG\|GTACATGCTT...CATATCTTAATC/CATATCTTAATC...CACAG\|CGG	1	1	66.887
347236	GT-AG	0.1153271110563288	128	rna-XM_022226918.1 76513	7	2440581	2440708	Acanthaster planci 133434	TGT\|GTATGTATTG...CACTTTTTATCT/AATTGTTTTACC...TCCAG\|GTG	1	1	80.088
347237	GT-AG	1.000000099473604e-05	361	rna-XM_022226918.1 76513	8	2440808	2441168	Acanthaster planci 133434	CAG\|GTAAGGAAAC...ACATTTTTAAAT/TATTGTCTGATA...TTTAG\|AAC	1	1	85.534

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);