introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 76494

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
346999 GT-AG 0 1.000000099473604e-05 2207 rna-XM_022246792.1 76494 1 1669960 1672166 Acanthaster planci 133434 TGC|GTGAGTATGC...TTTTCTATATTG/TTTTTTTCTATA...CTCAG|GAA 2 1 29.229
347000 GT-AG 0 6.737371113837019e-05 1081 rna-XM_022246792.1 76494 2 1668805 1669885 Acanthaster planci 133434 AAG|GTATGTGTAC...TCATATTTAATT/TCATATTTAATT...TTTAG|GGA 1 1 32.604
347001 GT-AG 0 1.000000099473604e-05 403 rna-XM_022246792.1 76494 3 1668204 1668606 Acanthaster planci 133434 AAG|GTTAGTTACT...AATACTTTGAAA/TTTGAAATCATT...AATAG|GTT 1 1 41.632
347002 GT-AG 0 0.0001028521823961 762 rna-XM_022246792.1 76494 4 1667371 1668132 Acanthaster planci 133434 GAG|GTATGAGTGT...TTTTTCTTATTT/ATTTTTCTTATT...TCTAG|AAT 0 1 44.87
347003 GT-AG 0 1.000000099473604e-05 5247 rna-XM_022246792.1 76494 5 1661940 1667186 Acanthaster planci 133434 CAG|GTAAAAGTTA...TTGTTATTGATG/TTGTTATTGATG...TGAAG|GCC 1 1 53.26
347004 GT-AG 0 1.0641206382646669e-05 902 rna-XM_022246792.1 76494 6 1660759 1661660 Acanthaster planci 133434 ATC|GTAAGTCCAT...TTGTTCTTGTTT/TTTATGCTGATT...AACAG|AAG 1 1 65.983
347005 GT-AG 0 1.000000099473604e-05 829 rna-XM_022246792.1 76494 7 1659846 1660674 Acanthaster planci 133434 AAG|GTGAGAAATG...CTCTTCTTACTA/ACTCTTCTTACT...AATAG|GAA 1 1 69.813
347006 GT-AG 0 1.000000099473604e-05 980 rna-XM_022246792.1 76494 8 1658679 1659658 Acanthaster planci 133434 CAA|GTGAGTATGT...CCCTTTTTACTT/CCCCTTTTTACT...TACAG|GTC 2 1 78.34

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);