WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 6866926

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
35747305	GT-AG	1.000000099473604e-05	370	rna-XM_008048520.2 6866926	1	57426	57795	Carlito syrichta 1868482	GTG\|GTAATGTGTT...TCTTCTGTATCC/TCTGTATCCATT...TCCAG\|GGT	1	1	14.626
35747306	GT-AG	1.000000099473604e-05	2482	rna-XM_008048520.2 6866926	2	57912	60393	Carlito syrichta 1868482	GAG\|GTGAGTGAGG...CTGCCCTTATTT/CCTGCCCTTATT...CTTAG\|GCC	0	1	24.158
35747307	GT-AG	1.000000099473604e-05	482	rna-XM_008048520.2 6866926	3	60514	60995	Carlito syrichta 1868482	CAG\|GTGAGCCGTA...TCTCTCATATCT/GCTTCTCTCATA...TCCAG\|GTC	0	1	34.018
35747308	GT-AG	1.000000099473604e-05	2598	rna-XM_008048520.2 6866926	4	61089	63686	Carlito syrichta 1868482	GAG\|GTGGGAGGCT...CGCTCCTTCTCA/CTCCTTCTCAGA...CCCAG\|GTC	0	1	41.66
35747309	GT-AG	0.0002683036237064	1534	rna-XM_008048520.2 6866926	5	63796	65329	Carlito syrichta 1868482	TGA\|GTATGTACAC...TACTCCCTGCCA/CCTCTGGTCACA...TGCAG\|GTG	1	1	50.616
35747310	GT-AG	1.000000099473604e-05	2041	rna-XM_008048520.2 6866926	6	65483	67523	Carlito syrichta 1868482	TTG\|GTGAGCAGGT...GGCCACTTAACA/CCACAACTCAGG...GACAG\|AGA	1	1	63.188
35747311	GT-AG	1.000000099473604e-05	288	rna-XM_008048520.2 6866926	7	67725	68012	Carlito syrichta 1868482	CAG\|GTGAGGGAAG...CTGGTTTGAGTG/TCTGGTTTGAGT...TGCAG\|GTT	1	1	79.704
35747330	GT-AG	1.000000099473604e-05	2695	rna-XM_008048520.2 6866926	8	68184	70878	Carlito syrichta 1868482	GAG\|GTGAGCTACC...TGTTTTTTTTTT/ATAAATCTAAAA...AAAAG\|TTC		0	93.755

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);