WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 6866805

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
35746659	GT-AG	1.000000099473604e-05	117	rna-XM_008056391.2 6866805	1	128195	128311	Carlito syrichta 1868482	GAG\|GTCGAAGCCC...CGTGTGTGAGCC/GCGTGTGTGAGC...CGCAG\|AGC	2	1	8.147
35746660	GT-AG	1.000000099473604e-05	256	rna-XM_008056391.2 6866805	2	127791	128046	Carlito syrichta 1868482	AAG\|GTGCGCCCCC...AAACCCTTCCTT/TCGGACCTGACG...CACAG\|TAC	0	1	14.268
35746661	GT-AG	1.000000099473604e-05	8394	rna-XM_008056391.2 6866805	3	119330	127723	Carlito syrichta 1868482	AGG\|GTAAGGAGTC...GATTACTTAAAT/GGATTACTTAAA...TTAAG\|GAT	1	1	17.039
35746662	GT-AG	0.0005077176324028	2498	rna-XM_008056391.2 6866805	4	116776	119273	Carlito syrichta 1868482	CAG\|GTATTTAATG...TGTTTATTGACT/TGTTTATTGACT...TTGAG\|GCC	0	1	19.355
35746663	GT-AG	1.000000099473604e-05	2315	rna-XM_008056391.2 6866805	5	114361	116675	Carlito syrichta 1868482	CCG\|GTGAGTGTTG...TTTTTTTTAACT/TTTTTTTTAACT...TTTAG\|ATT	1	1	23.49
35746664	GT-AG	0.0004191072856796	1772	rna-XM_008056391.2 6866805	6	112524	114295	Carlito syrichta 1868482	ACC\|GTAAGCACTG...AAGCTCTTAAGA/AGAATTCTGACT...TTCAG\|CCT	0	1	26.179
35746665	GT-AG	6.511674359953553e-05	1318	rna-XM_008056391.2 6866805	7	111113	112430	Carlito syrichta 1868482	GAG\|GTAATCTATT...TTGGTTGTAATC/TTGGGTCTCAGT...TTCAG\|CGT	0	1	30.025
35746666	GT-AG	1.000000099473604e-05	1634	rna-XM_008056391.2 6866805	8	109400	111033	Carlito syrichta 1868482	CTG\|GTAAGTATGA...ACCCCTCTAATT/CTCTAATTTATA...CCCAG\|GAT	1	1	33.292

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);