WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 6866777

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
35746335	GT-AG	0.0004079555983376	2890	rna-XM_021706878.1 6866777	1	174074	176963	Carlito syrichta 1868482	GGA\|GTGACCAGGC...CCAATCTTATAT/CCCAATCTTATA...TCCAG\|AGC	1	1	9.987
35746336	GT-AG	1.000000099473604e-05	4003	rna-XM_021706878.1 6866777	2	169883	173885	Carlito syrichta 1868482	TCG\|GTAGGAATGC...GAAGCCTGTGCA/TGAGTGCCGAGC...CTTAG\|GTG	0	1	21.947
35746337	GT-AG	4.2215486464453214e-05	653	rna-XM_021706878.1 6866777	3	169047	169699	Carlito syrichta 1868482	CAG\|GTAAGCTCTG...CTCCTCTTGCCC/CCCCAACCCACT...TCCAG\|GAC	0	1	33.588
35746338	GT-AG	0.0112723319440231	2228	rna-XM_021706878.1 6866777	4	166701	168928	Carlito syrichta 1868482	CAG\|GTAACCATGC...CTCTCCTTGCTC/TCCCACCTAACC...ATTAG\|GGC	1	1	41.094
35746339	GT-AG	1.000000099473604e-05	2601	rna-XM_021706878.1 6866777	5	163866	166466	Carlito syrichta 1868482	ACG\|GTGAGGAGGA...TCCTTCTTGCCC/AAGGTGATAACG...TGCAG\|CCA	1	1	55.98
35746340	GT-AG	1.000000099473604e-05	11575	rna-XM_021706878.1 6866777	6	152048	163622	Carlito syrichta 1868482	AAG\|GTGAGTGCTG...GAGGTCTTAAAT/CTTAAATTTAAA...TCTAG\|TTT	1	1	71.438
35746341	GT-AG	1.000000099473604e-05	2234	rna-XM_021706878.1 6866777	7	149696	151929	Carlito syrichta 1868482	TCT\|GTGAGTGTGA...TGTTCCTTTGTA/ACTTAACTCACT...TCAAG\|GGG	2	1	78.944
35746342	GT-AG	1.000000099473604e-05	5219	rna-XM_021706878.1 6866777	8	144258	149476	Carlito syrichta 1868482	AAG\|GTGAGTGCTG...TTTGCTTTATGT/GTTTGCTTTATG...TTCAG\|AAT	2	1	92.875

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);