introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 6831673

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541612 GT-AG 0 1.000000099473604e-05 2868 rna-XM_009703292.1 6831673 1 8013 10880 Cariama cristata 54380 CAG|GTAAAAGCTC...TTACTCTTGTTG/CACATGCTTACT...CACAG|GAA 0 1 4.79
35541613 GT-AG 0 1.000000099473604e-05 103 rna-XM_009703292.1 6831673 2 10973 11075 Cariama cristata 54380 TTG|GTAAGATTGT...GAACGCTTACTC/AGAACGCTTACT...CACAG|GTA 2 1 13.972
35541614 GT-AG 0 1.000000099473604e-05 732 rna-XM_009703292.1 6831673 3 11180 11911 Cariama cristata 54380 TCG|GTGAGTTTTA...TTAGCCATAGCT/GATTTATTCACA...CACAG|GGG 1 1 24.351
35541615 GT-AG 0 0.0003530394421304 327 rna-XM_009703292.1 6831673 4 12034 12360 Cariama cristata 54380 CCT|GTAAGTATTT...TTGCTTTTGACT/TTGCTTTTGACT...TACAG|GTG 0 1 36.527
35541616 GT-AG 0 1.000000099473604e-05 944 rna-XM_009703292.1 6831673 5 12567 13510 Cariama cristata 54380 CAG|GTGAGCTGAG...CTTTTTTTGTTT/GCAGAGCTCAAA...CTTAG|GCT 2 1 57.086
35541617 GT-AG 0 1.000000099473604e-05 1087 rna-XM_009703292.1 6831673 6 13617 14703 Cariama cristata 54380 ATA|GTAAGTGGAT...GACCCATTAATG/TTGCTTCTTATT...TCCAG|CTC 0 1 67.665
35541618 GT-AG 0 0.0002470179027011 1254 rna-XM_009703292.1 6831673 7 14871 16124 Cariama cristata 54380 CAA|GTACGTCTGG...TGTTTCTTCTCT/GGTAACCTCAGT...TCCAG|GTT 2 1 84.331

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);