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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

37 rows where transcript_id = 6831664

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541504 GT-AG 0 0.0001108576463987 13031 rna-XM_009702176.1 6831664 2 71242 84272 Cariama cristata 54380 TTG|GTAAGCATGT...GTATTTTTAGTG/ACTTCTCTTACT...TTCAG|ATG 0 1 6.058
35541505 GT-AG 0 0.0003381568260548 3850 rna-XM_009702176.1 6831664 3 67232 71081 Cariama cristata 54380 CAG|GTATAGTCAT...TTTTTTTTACTT/CTTTTTTTTACT...TACAG|AAA 1 1 8.9
35541506 GT-AG 0 1.000000099473604e-05 5368 rna-XM_009702176.1 6831664 4 61607 66974 Cariama cristata 54380 ATA|GTAAGTAAAC...ATATTCTAATCT/AATATTCTAATC...TTTAG|GTT 0 1 13.466
35541507 GT-AG 0 1.000000099473604e-05 703 rna-XM_009702176.1 6831664 5 60820 61522 Cariama cristata 54380 CAG|GTAGGAAAAA...AAGCCCTTATTT/AAAGCCCTTATT...CTTAG|GAA 0 1 14.958
35541508 GT-AG 0 4.873856067185106e-05 932 rna-XM_009702176.1 6831664 6 59763 60694 Cariama cristata 54380 TAG|GTACAGTATC...ATTCTTTTATTT/TATTCTTTTATT...TCAAG|GGA 2 1 17.179
35541509 GT-AG 0 1.000000099473604e-05 317 rna-XM_009702176.1 6831664 7 59405 59721 Cariama cristata 54380 TTG|GTGAGTTATT...AAGCTTTTATAT/TGAAAATTCATT...TGCAG|GTT 1 1 17.907
35541510 GT-AG 0 5.5023541212248105e-05 1104 rna-XM_009702176.1 6831664 8 58195 59298 Cariama cristata 54380 CGT|GTAAGTACCT...TATTCCTGAATT/TTATTCCTGAAT...TTTAG|ATT 2 1 19.79
35541511 GT-AG 0 6.975980766680058e-05 647 rna-XM_009702176.1 6831664 9 57401 58047 Cariama cristata 54380 TGA|GTAAGTATCA...GATTTATTGACA/GATTTATTGACA...GACAG|TAC 2 1 22.402
35541512 GT-AG 0 1.000000099473604e-05 1349 rna-XM_009702176.1 6831664 10 55910 57258 Cariama cristata 54380 CTG|GTGAGTGAAC...GTAATCTTGTTT/TAATGTCTAAAA...TTTAG|AAA 0 1 24.924
35541513 GT-AG 0 0.0003135221321738 8476 rna-XM_009702176.1 6831664 11 47329 55804 Cariama cristata 54380 ATG|GTAAGCCTTC...TTTTGCTTGACT/TTTTGCTTGACT...TGCAG|CAC 0 1 26.79
35541514 GT-AG 0 0.1922971278855931 1374 rna-XM_009702176.1 6831664 12 45809 47182 Cariama cristata 54380 AGA|GTATGTTTTT...TATGTTTTACAT/TTTACATTTACC...GTCAG|ACC 2 1 29.384
35541515 GT-AG 0 1.9815773129934736e-05 96 rna-XM_009702176.1 6831664 13 45531 45626 Cariama cristata 54380 GTA|GTAAGTAATT...AAAGTTTTAAAA/AAAGTTTTAAAA...TCCAG|TTT 1 1 32.617
35541516 GT-AG 0 0.0001236040678705 1151 rna-XM_009702176.1 6831664 14 44243 45393 Cariama cristata 54380 AGG|GTATTTAAAT...GTATTTTTTTTT/TTGTTTTCCATT...TGTAG|CAA 0 1 35.051
35541517 GT-AG 0 0.0049192440668615 3269 rna-XM_009702176.1 6831664 15 40856 44124 Cariama cristata 54380 ATG|GTATGTTTGT...TAGTATTTGACT/TAGTATTTGACT...TGCAG|GTT 1 1 37.147
35541518 GT-AG 0 1.000000099473604e-05 1220 rna-XM_009702176.1 6831664 16 39540 40759 Cariama cristata 54380 TTG|GTAAAAGCCT...AACCTTTTAACT/TTTTTTTTTACT...TATAG|CCT 1 1 38.852
35541519 GT-AG 0 1.000000099473604e-05 111 rna-XM_009702176.1 6831664 17 39262 39372 Cariama cristata 54380 CAG|GTGCATGTTT...ATCATTTTATCT/TTCAAATTCACT...TTAAG|GTT 0 1 41.819
35541520 GT-AG 0 3.16489640296362e-05 1096 rna-XM_009702176.1 6831664 18 38036 39131 Cariama cristata 54380 AAG|GTACTGTGAA...CTTACTTTAGCC/GGCACTCTTACT...CCAAG|GTG 1 1 44.129
35541521 GT-AG 0 1.000000099473604e-05 634 rna-XM_009702176.1 6831664 19 37275 37908 Cariama cristata 54380 AAG|GTAAAAAGAG...GTTTTTTTAAAA/CTTTCTCTAACA...TGTAG|GTG 2 1 46.385
35541522 GT-AG 0 3.4318826934159046e-05 533 rna-XM_009702176.1 6831664 20 36531 37063 Cariama cristata 54380 GAG|GTACAAATTC...CTGGTTTTATCA/CCTGGTTTTATC...CACAG|TGT 0 1 50.133
35541523 GT-AG 0 1.000000099473604e-05 714 rna-XM_009702176.1 6831664 21 35652 36365 Cariama cristata 54380 GAG|GTAATGAACC...ACGATTCTAATA/ACGATTCTAATA...TACAG|TGT 0 1 53.064
35541524 GT-AG 0 1.000000099473604e-05 1701 rna-XM_009702176.1 6831664 22 33786 35486 Cariama cristata 54380 TCA|GTGAGTACAT...TAATTTTTAATT/TAATTTTTAATT...AACAG|TGT 0 1 55.996
35541525 GT-AG 0 1.000000099473604e-05 1310 rna-XM_009702176.1 6831664 23 32353 33662 Cariama cristata 54380 CAA|GTAAGTTAAA...TTTTCCTCACCC/TTTTTCCTCACC...TACAG|GAA 0 1 58.181
35541526 GT-AG 0 0.0048436807104154 294 rna-XM_009702176.1 6831664 24 31951 32244 Cariama cristata 54380 CCA|GTATGTAATG...TGAGCTTGGACT/GCTCTCCTAAAG...GACAG|TGC 0 1 60.099
35541527 GT-AG 0 0.0001842830381995 226 rna-XM_009702176.1 6831664 25 31560 31785 Cariama cristata 54380 CCT|GTAAGTATTA...TAATTATTAATA/CGGTTATTAATT...GTCAG|TGC 0 1 63.031
35541528 GT-AG 0 1.000000099473604e-05 332 rna-XM_009702176.1 6831664 26 30937 31268 Cariama cristata 54380 GCA|GTAAGAATTT...TTTTTCTGATTA/ATTTTTCTGATT...GGTAG|TGC 0 1 68.2
35541529 GT-AG 0 1.000000099473604e-05 1453 rna-XM_009702176.1 6831664 27 29322 30774 Cariama cristata 54380 GAA|GTAAGATCAT...ACTCTCTTAAAA/TATGTGATGACT...TTCAG|TGT 0 1 71.078
35541530 GT-AG 0 1.0820164214082344e-05 16156 rna-XM_009702176.1 6831664 28 12989 29144 Cariama cristata 54380 TCG|GTACGATAGC...ATTACTTTGAGA/TTTCTTATTACT...TTCAG|TGT 0 1 74.223
35541531 GT-AG 0 0.0001209926063975 1234 rna-XM_009702176.1 6831664 29 11587 12820 Cariama cristata 54380 GAG|GTATGTAAAA...CTAATTTTGATC/CTAATTTTGATC...TTTAG|TGT 0 1 77.207
35541532 GT-AG 0 1.000000099473604e-05 2986 rna-XM_009702176.1 6831664 30 8427 11412 Cariama cristata 54380 GAT|GTAAGTAAGG...AAAACTGTGACT/GTTTTTCTCACT...CTCAG|TGC 0 1 80.298
35541533 GT-AG 0 1.000000099473604e-05 665 rna-XM_009702176.1 6831664 31 7591 8255 Cariama cristata 54380 CAG|GTAAACGAAC...GGTTGTTTCACA/GGTTGTTTCACA...TTCAG|TGC 0 1 83.336
35541534 GT-AG 0 1.000000099473604e-05 127 rna-XM_009702176.1 6831664 32 7263 7389 Cariama cristata 54380 CAA|GTGAGTACAG...TAACCCTTGCTG/TGGTTATTTACT...CCTAG|TGC 0 1 86.907
35541535 GT-AG 0 1.000000099473604e-05 159 rna-XM_009702176.1 6831664 33 6974 7132 Cariama cristata 54380 AAT|GTAAGTGATA...TATGATTTAATC/TAATCATTCATT...TGAAG|GTG 1 1 89.217
35541536 GT-AG 0 0.0030866386143249 97 rna-XM_009702176.1 6831664 34 6782 6878 Cariama cristata 54380 AAG|GTACTCTTAA...ACTTTTCTAATA/ACTTTTCTAATA...TCCAG|ATT 0 1 90.904
35541537 GT-AG 0 1.000000099473604e-05 405 rna-XM_009702176.1 6831664 35 6282 6686 Cariama cristata 54380 CAG|GTACAAAAGT...AAATCTTTGCTA/TGTTGTGTTATG...TCTAG|GCT 2 1 92.592
35541538 GT-AG 0 0.0004518037499894 737 rna-XM_009702176.1 6831664 36 5411 6147 Cariama cristata 54380 AAA|GTAAGCATTT...TTCACCTGAACT/TGTTAAGTAATT...TCTAG|CCA 1 1 94.972
35541539 GT-AG 0 0.0013431432252095 2878 rna-XM_009702176.1 6831664 37 2441 5318 Cariama cristata 54380 CAG|GTATTTATGG...TGTATTTTACCT/CTGTATTTTACC...GTTAG|GGA 0 1 96.607
35541540 GT-AG 0 1.6687960078692333e-05 646 rna-XM_009702176.1 6831664 38 1690 2335 Cariama cristata 54380 CAC|GTAAGTCAAT...CTTTTCTTGATT/CTTTGTCTAATT...CCCAG|GAT 0 1 98.472

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 115.383ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)