introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 6831663
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35541493 | GT-AG | 0 | 1.000000099473604e-05 | 2610 | rna-XM_009702066.1 6831663 | 1 | 31470 | 34079 | Cariama cristata 54380 | AAG|GTAAGACTGC...ACTGCTTTAAAA/ACTGCTTTAAAA...CACAG|TGC | 0 | 1 | 2.404 |
35541494 | GT-AG | 0 | 0.002400279652255 | 1531 | rna-XM_009702066.1 6831663 | 2 | 29843 | 31373 | Cariama cristata 54380 | CTG|GTATGTATAC...TGGCTCTTATTT/GTGGCTCTTATT...TCTAG|ATG | 0 | 1 | 6.126 |
35541495 | GT-AG | 0 | 1.000000099473604e-05 | 2551 | rna-XM_009702066.1 6831663 | 3 | 27208 | 29758 | Cariama cristata 54380 | AAT|GTGAGTATTT...GCATCTTTGAAT/TTGAATTTGACT...TACAG|GTA | 0 | 1 | 9.383 |
35541496 | GT-AG | 0 | 1.000000099473604e-05 | 1765 | rna-XM_009702066.1 6831663 | 4 | 25350 | 27114 | Cariama cristata 54380 | CAG|GTAATAAAAC...TTCACCTTTTAT/GCGTGTTTCACC...TACAG|ATT | 0 | 1 | 12.99 |
35541497 | GT-AG | 0 | 0.0001036339951152 | 1788 | rna-XM_009702066.1 6831663 | 5 | 23371 | 25158 | Cariama cristata 54380 | AAA|GTAAGCTAAC...GATTTTGTAACG/CTGTATGTAATT...TTTAG|GTA | 2 | 1 | 20.396 |
35541498 | GT-AG | 0 | 1.000000099473604e-05 | 1007 | rna-XM_009702066.1 6831663 | 6 | 22170 | 23176 | Cariama cristata 54380 | AAG|GTAAAACGCC...AGCATTTTAAAG/TGTGTACTCAAG...CATAG|ATA | 1 | 1 | 27.918 |
35541499 | GT-AG | 0 | 0.0015226189089645 | 1443 | rna-XM_009702066.1 6831663 | 7 | 20644 | 22086 | Cariama cristata 54380 | GGG|GTATGTGTTT...TGGCTTTTAATG/TGTATCATCACT...TATAG|GAA | 0 | 1 | 31.136 |
35541500 | GT-AG | 0 | 0.0116135161328948 | 1044 | rna-XM_009702066.1 6831663 | 8 | 18283 | 19326 | Cariama cristata 54380 | GAG|GTATTTCATT...TATTTCTTAATT/TATTTCTTAATT...AACAG|GCC | 0 | 1 | 82.202 |
35541501 | GT-AG | 0 | 0.0002503743153786 | 1540 | rna-XM_009702066.1 6831663 | 9 | 16561 | 18100 | Cariama cristata 54380 | CAG|GTATTTCACA...TTTGCTTTTGCA/CTTAGCTTTATG...TTCAG|AAC | 2 | 1 | 89.259 |
35541502 | GT-AG | 0 | 1.000000099473604e-05 | 1036 | rna-XM_009702066.1 6831663 | 10 | 15464 | 16499 | Cariama cristata 54380 | GAG|GTAAGTATGT...TTTTTTTTATAT/CTATTTCTGATT...TTAAG|GAA | 0 | 1 | 91.625 |
35541503 | GT-AG | 0 | 1.000000099473604e-05 | 1534 | rna-XM_009702066.1 6831663 | 11 | 13868 | 15401 | Cariama cristata 54380 | CAG|GTGAGTCATT...TGCCTCTTATCA/CTGCCTCTTATC...TTCAG|GAA | 2 | 1 | 94.029 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);