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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

23 rows where transcript_id = 6831641

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541217 GT-AG 0 0.0074749411105443 418 rna-XM_009699310.1 6831641 1 34798 35215 Cariama cristata 54380 TGG|GTGTGTTTTT...CATTCCTTAACC/CATTCCTTAACC...AACAG|GAT 0 1 6.323
35541218 GT-AG 0 1.000000099473604e-05 1419 rna-XM_009699310.1 6831641 2 33292 34710 Cariama cristata 54380 GGG|GTAAAGCAAT...TCTTCCTGAGTT/AGTTCTCTAACT...AGCAG|CTT 0 1 9.719
35541219 GT-AG 0 1.000000099473604e-05 509 rna-XM_009699310.1 6831641 3 32636 33144 Cariama cristata 54380 CAG|GTAAGTGATG...ATATCTGTATTG/TTTTAATTGATT...TCTAG|TTC 0 1 15.457
35541220 GT-AG 0 3.375889944829242e-05 1687 rna-XM_009699310.1 6831641 4 30887 32573 Cariama cristata 54380 TAG|GTACGTGTTC...TACTTGTTATCT/TATCTGTTGATT...TCTAG|ACA 2 1 17.877
35541221 GT-AG 0 0.0019640414126439 799 rna-XM_009699310.1 6831641 5 29922 30720 Cariama cristata 54380 CAG|GTAATCTTTG...TTTCTTTTATTT/CTTTTATTTATT...GATAG|TCA 0 1 24.356
35541222 GT-AG 0 0.0004220394795279 121 rna-XM_009699310.1 6831641 6 29726 29846 Cariama cristata 54380 ACA|GTAAGTATCA...AATTCCTTACAA/GAATTCCTTACA...CAAAG|AAA 0 1 27.283
35541223 GT-AG 0 2.994930332521612e-05 311 rna-XM_009699310.1 6831641 7 29322 29632 Cariama cristata 54380 CAT|GTAAGTAATT...GGATTTTTAATT/GGATTTTTAATT...TTCAG|CCA 0 1 30.913
35541224 GT-AG 0 1.000000099473604e-05 2254 rna-XM_009699310.1 6831641 8 26942 29195 Cariama cristata 54380 AGG|GTAAGGTGAA...TCCTTTTTAACC/CAATTACTCATC...TTCAG|GAT 0 1 35.831
35541225 GT-AG 0 1.000000099473604e-05 206 rna-XM_009699310.1 6831641 9 26655 26860 Cariama cristata 54380 AGG|GTAAGTAGGC...TTCTTTTTATTG/TTTCTTTTTATT...AGTAG|ACT 0 1 38.993
35541226 GT-AG 0 1.000000099473604e-05 222 rna-XM_009699310.1 6831641 10 26389 26610 Cariama cristata 54380 AGA|GTGAGTATGT...ACTGTTTTAATT/ACTGTTTTAATT...GCTAG|GTA 2 1 40.71
35541227 GT-AG 0 1.000000099473604e-05 506 rna-XM_009699310.1 6831641 11 25756 26261 Cariama cristata 54380 CTG|GTAGGTGAAG...ATTAATTTAATA/ATTAATTTAATA...TACAG|GTA 0 1 45.667
35541228 GT-AG 0 1.2356491891068143e-05 2427 rna-XM_009699310.1 6831641 12 23237 25663 Cariama cristata 54380 GGA|GTAGGTGGTA...GTTTTCTTTTTT/AAGCGTTTTACT...TGTAG|TGA 2 1 49.258
35541229 GT-AG 0 0.0032259898231457 1294 rna-XM_009699310.1 6831641 13 21803 23096 Cariama cristata 54380 ATG|GTAACTCATA...TTTTTTTTACCT/TTTTTTTTTACC...GTCAG|CGG 1 1 54.723
35541230 GT-AG 0 7.543715087888851e-05 2720 rna-XM_009699310.1 6831641 14 18922 21641 Cariama cristata 54380 GAG|GTATAGCATC...TGTGCCATATCT/AAAAAATTAAAA...TGCAG|CAA 0 1 61.007
35541231 GT-AG 0 2.8722056400515277e-05 2005 rna-XM_009699310.1 6831641 15 16811 18815 Cariama cristata 54380 CTG|GTATGAAATG...TCTGTTTTACTT/AAGTTTTTCATG...AACAG|GTT 1 1 65.144
35541232 GT-AG 0 0.0083012941392216 1638 rna-XM_009699310.1 6831641 16 15048 16685 Cariama cristata 54380 GAT|GTATGCAAAA...TTTTTTTTGGTC/TTTGGTCTGATT...CGCAG|AGG 0 1 70.023
35541233 GT-AG 0 1.000000099473604e-05 1952 rna-XM_009699310.1 6831641 17 13006 14957 Cariama cristata 54380 AAG|GTCAGAATCT...TTTTTTTTACAT/TTTTTTTTTACA...TGTAG|ACC 0 1 73.536
35541234 GT-AG 0 1.000000099473604e-05 2322 rna-XM_009699310.1 6831641 18 10563 12884 Cariama cristata 54380 GAG|GTACTAAACA...ATCCCATTGACT/GACTTTCTGATT...CACAG|ATG 1 1 78.259
35541235 GT-AG 0 1.000000099473604e-05 99 rna-XM_009699310.1 6831641 19 10375 10473 Cariama cristata 54380 GAG|GTAATATGGA...TGATCCCTGGCA/CGGGTGGTGATC...TCAAG|GGC 0 1 81.733
35541236 GT-AG 0 1.000000099473604e-05 1188 rna-XM_009699310.1 6831641 20 9052 10239 Cariama cristata 54380 AAG|GTACAAAGAT...ATTGTGTTGATT/ATTGTGTTGATT...TTTAG|GTA 0 1 87.002
35541237 GT-AG 0 0.0042015624701141 1699 rna-XM_009699310.1 6831641 21 7277 8975 Cariama cristata 54380 CAG|GTATTTGCTT...TTTTCTTTGACT/TTTTCTTTGACT...TTCAG|CAA 1 1 89.969
35541238 GT-AG 0 1.000000099473604e-05 910 rna-XM_009699310.1 6831641 22 6239 7148 Cariama cristata 54380 AGG|GTGAGTATTG...TGTTTTTTAATA/TGTTTTTTAATA...AAAAG|AAT 0 1 94.965
35541239 GT-AG 0 0.0010802572824843 1193 rna-XM_009699310.1 6831641 23 4947 6139 Cariama cristata 54380 CAG|GTATATATTG...TGAAACTTAGCT/CTCTGTCTAATG...TTCAG|GTG 0 1 98.829

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
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