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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 6831639

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541202 GT-AG 0 0.0063711204011424 1207 rna-XM_009699095.1 6831639 4 41553 42759 Cariama cristata 54380 TCG|GTAGGCTTAA...CTGACTTTGATA/CAAATGCTGACT...AATAG|ATG 0 1 12.191
35541203 GT-AG 0 1.000000099473604e-05 1345 rna-XM_009699095.1 6831639 5 42922 44266 Cariama cristata 54380 AAG|GTAAGATTTT...TTTGCCTTTACA/TTTGCCTTTACA...GGCAG|AAG 0 1 17.019
35541204 GT-AG 0 1.000000099473604e-05 971 rna-XM_009699095.1 6831639 6 44381 45351 Cariama cristata 54380 CAA|GTGAGTCCCA...TTATCCTTCCCC/ATGGTGGTTATC...CGCAG|GAG 0 1 20.417
35541205 GT-AG 0 1.000000099473604e-05 418 rna-XM_009699095.1 6831639 8 46759 47176 Cariama cristata 54380 CAG|GTATGGAGGT...TTCTCTTTCATC/TTCTCTTTCATC...TGCAG|GTT 2 1 61.162
35541206 GT-AG 0 7.894982348131041e-05 1272 rna-XM_009699095.1 6831639 10 47399 48670 Cariama cristata 54380 GCG|GTAGGTTTAT...ATTCTCTTCCCC/AGTGTGTTGAAC...AGCAG|AAG 0 1 67.72
35541207 GT-AG 0 1.000000099473604e-05 229 rna-XM_009699095.1 6831639 12 51864 52092 Cariama cristata 54380 TCG|GTGAGAGCAC...GACCTCATAGTA/GTGGACCTCATA...TTTAG|GTA 1 1 93.592
35541208 GT-AG 0 1.000000099473604e-05 1079 rna-XM_009699095.1 6831639 13 52274 53352 Cariama cristata 54380 CAG|GTGAGAGGTG...TTTTCTTTCTCT/GTTTTGTTAAAA...TTCAG|TCG 2 1 98.987
35541209 GT-AG 0 1.000000099473604e-05 37525 rna-XM_009699095.1 6831639 1 555 38079 Cariama cristata 54380 ACT|GTAAGTACAT...GCCCCTCTAACA/GCCCCTCTAACA...TGCAG|GGA   0 2.235
35541210 GT-AG 0 2.272047752126633e-05 2241 rna-XM_009699095.1 6831639 2 38243 40483 Cariama cristata 54380 TCT|GTAAGTGGAA...TGTTCTTTACTT/TTGTTCTTTACT...TTCAG|TGG   0 7.094
35541211 GT-AG 0 0.1251752404345278 776 rna-XM_009699095.1 6831639 3 40577 41352 Cariama cristata 54380 CCA|GTATGCACCT...TATTTCTAAGCT/GTATTTCTAAGC...CTAAG|CCT   0 9.866

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 128.578ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)