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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 6831632

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541125 GT-AG 0 0.0191074734181632 750 rna-XM_009698324.1 6831632 1 16406 17155 Cariama cristata 54380 CAG|GTATATTTCA...TTGTGTTTAACT/TTGTGTTTAACT...CTCAG|GCA 1 1 9.316
35541126 GT-AG 0 1.000000099473604e-05 1726 rna-XM_009698324.1 6831632 2 14546 16271 Cariama cristata 54380 AAG|GTGAGCATTT...TAATCCTTAACA/ATTTTACTCAAC...TTCAG|GGT 0 1 15.956
35541127 GT-AG 0 1.000000099473604e-05 1142 rna-XM_009698324.1 6831632 3 13212 14353 Cariama cristata 54380 AAA|GTAAGTCAGT...ATAACTGTAAAT/TTAGGGATAACT...GTCAG|GAT 0 1 25.471
35541128 GT-AG 0 1.3019369956296445e-05 902 rna-XM_009698324.1 6831632 4 12156 13057 Cariama cristata 54380 CAG|GTAGGCAATT...AAAGTTTTGATG/AAAGTTTTGATG...TCTAG|GCT 1 1 33.102
35541129 GT-AG 0 1.000000099473604e-05 809 rna-XM_009698324.1 6831632 5 11185 11993 Cariama cristata 54380 CAG|GTAAGTAGCT...AATGCTTTTTCT/GGTTTGGTAATG...AATAG|GAC 1 1 41.13
35541130 GT-AG 0 0.0001151000690055 779 rna-XM_009698324.1 6831632 6 10295 11073 Cariama cristata 54380 CAG|GTATGAATGT...TTTTTTTTAAAA/TTTTTTTTAAAA...GCCAG|GTG 1 1 46.63
35541131 GT-AG 0 1.000000099473604e-05 1261 rna-XM_009698324.1 6831632 7 8888 10148 Cariama cristata 54380 CAG|GTAAGAATAA...TTTTCCTTATTT/CTTTTCCTTATT...TAAAG|ATG 0 1 53.865
35541132 GT-AG 0 0.0002588768009158 629 rna-XM_009698324.1 6831632 8 8063 8691 Cariama cristata 54380 TAG|GTATGTGTAT...GTGTCTTCAACT/CTGTGTTTTATG...AATAG|GTT 1 1 63.578
35541133 GT-AG 0 1.000000099473604e-05 1904 rna-XM_009698324.1 6831632 9 5925 7828 Cariama cristata 54380 AAG|GTGAGACCTT...TGTCTCTGAATA/CTGTCTCTGAAT...TGCAG|GTA 1 1 75.173
35541134 GT-AG 0 1.000000099473604e-05 736 rna-XM_009698324.1 6831632 10 5028 5763 Cariama cristata 54380 ATG|GTAAGTCAGG...TAGCTTTTACTG/CTTTTACTGAAG...TCCAG|GGC 0 1 83.152
35541135 GT-AG 0 1.000000099473604e-05 4193 rna-XM_009698324.1 6831632 11 655 4847 Cariama cristata 54380 GTG|GTAAGAAGTC...TCTCCTTTATTT/TTCTTCTTCAGC...TTCAG|GCT 0 1 92.071

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.969ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)