introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 6831632
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35541125 | GT-AG | 0 | 0.0191074734181632 | 750 | rna-XM_009698324.1 6831632 | 1 | 16406 | 17155 | Cariama cristata 54380 | CAG|GTATATTTCA...TTGTGTTTAACT/TTGTGTTTAACT...CTCAG|GCA | 1 | 1 | 9.316 |
35541126 | GT-AG | 0 | 1.000000099473604e-05 | 1726 | rna-XM_009698324.1 6831632 | 2 | 14546 | 16271 | Cariama cristata 54380 | AAG|GTGAGCATTT...TAATCCTTAACA/ATTTTACTCAAC...TTCAG|GGT | 0 | 1 | 15.956 |
35541127 | GT-AG | 0 | 1.000000099473604e-05 | 1142 | rna-XM_009698324.1 6831632 | 3 | 13212 | 14353 | Cariama cristata 54380 | AAA|GTAAGTCAGT...ATAACTGTAAAT/TTAGGGATAACT...GTCAG|GAT | 0 | 1 | 25.471 |
35541128 | GT-AG | 0 | 1.3019369956296445e-05 | 902 | rna-XM_009698324.1 6831632 | 4 | 12156 | 13057 | Cariama cristata 54380 | CAG|GTAGGCAATT...AAAGTTTTGATG/AAAGTTTTGATG...TCTAG|GCT | 1 | 1 | 33.102 |
35541129 | GT-AG | 0 | 1.000000099473604e-05 | 809 | rna-XM_009698324.1 6831632 | 5 | 11185 | 11993 | Cariama cristata 54380 | CAG|GTAAGTAGCT...AATGCTTTTTCT/GGTTTGGTAATG...AATAG|GAC | 1 | 1 | 41.13 |
35541130 | GT-AG | 0 | 0.0001151000690055 | 779 | rna-XM_009698324.1 6831632 | 6 | 10295 | 11073 | Cariama cristata 54380 | CAG|GTATGAATGT...TTTTTTTTAAAA/TTTTTTTTAAAA...GCCAG|GTG | 1 | 1 | 46.63 |
35541131 | GT-AG | 0 | 1.000000099473604e-05 | 1261 | rna-XM_009698324.1 6831632 | 7 | 8888 | 10148 | Cariama cristata 54380 | CAG|GTAAGAATAA...TTTTCCTTATTT/CTTTTCCTTATT...TAAAG|ATG | 0 | 1 | 53.865 |
35541132 | GT-AG | 0 | 0.0002588768009158 | 629 | rna-XM_009698324.1 6831632 | 8 | 8063 | 8691 | Cariama cristata 54380 | TAG|GTATGTGTAT...GTGTCTTCAACT/CTGTGTTTTATG...AATAG|GTT | 1 | 1 | 63.578 |
35541133 | GT-AG | 0 | 1.000000099473604e-05 | 1904 | rna-XM_009698324.1 6831632 | 9 | 5925 | 7828 | Cariama cristata 54380 | AAG|GTGAGACCTT...TGTCTCTGAATA/CTGTCTCTGAAT...TGCAG|GTA | 1 | 1 | 75.173 |
35541134 | GT-AG | 0 | 1.000000099473604e-05 | 736 | rna-XM_009698324.1 6831632 | 10 | 5028 | 5763 | Cariama cristata 54380 | ATG|GTAAGTCAGG...TAGCTTTTACTG/CTTTTACTGAAG...TCCAG|GGC | 0 | 1 | 83.152 |
35541135 | GT-AG | 0 | 1.000000099473604e-05 | 4193 | rna-XM_009698324.1 6831632 | 11 | 655 | 4847 | Cariama cristata 54380 | GTG|GTAAGAAGTC...TCTCCTTTATTT/TTCTTCTTCAGC...TTCAG|GCT | 0 | 1 | 92.071 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);