introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 6831629
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Suggested facets: dinucleotide_pair, score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35541101 | GT-AG | 0 | 1.000000099473604e-05 | 903 | rna-XM_009697890.1 6831629 | 2 | 3341 | 4243 | Cariama cristata 54380 | AAG|GTAAGTGGAA...ATTTCCTTATTT/TATTTCCTTATT...AACAG|ATG | 0 | 1 | 2.689 |
35541102 | GT-AG | 0 | 1.000000099473604e-05 | 900 | rna-XM_009697890.1 6831629 | 3 | 4665 | 5564 | Cariama cristata 54380 | TGG|GTAAGATACC...TATTTTTTATGT/ATATTTTTTATG...CACAG|CTA | 1 | 1 | 19.845 |
35541103 | GT-AG | 0 | 0.0035425541292686 | 171 | rna-XM_009697890.1 6831629 | 4 | 5701 | 5871 | Cariama cristata 54380 | TCT|GTATGTAGAT...TGCTTTTTAGGT/TTGCTTTTTAGG...TCTAG|AAA | 2 | 1 | 25.387 |
35541104 | GT-AG | 0 | 0.0076645947821609 | 580 | rna-XM_009697890.1 6831629 | 5 | 6040 | 6619 | Cariama cristata 54380 | CTT|GTGTTCCTTA...TTGGTTTTGGCT/TGCATTGTCAGT...TCTAG|CCC | 2 | 1 | 32.233 |
35541105 | GT-AG | 0 | 1.000000099473604e-05 | 371 | rna-XM_009697890.1 6831629 | 6 | 6749 | 7119 | Cariama cristata 54380 | CAG|GTGAGTTTTG...TGTTTCTTTGTG/TATTTTCTAATG...CGTAG|TTT | 2 | 1 | 37.49 |
35541106 | GT-AG | 0 | 0.0001101368763942 | 705 | rna-XM_009697890.1 6831629 | 7 | 7205 | 7909 | Cariama cristata 54380 | CAG|GTGGACTTTT...TATCTTTTAATT/TATCTTTTAATT...ACTAG|AAA | 0 | 1 | 40.954 |
35541107 | GT-AG | 0 | 1.000000099473604e-05 | 1489 | rna-XM_009697890.1 6831629 | 8 | 8072 | 9560 | Cariama cristata 54380 | GAG|GTGAGGTTTT...TTAATTTTATTC/CATATATTTACT...TAAAG|GAA | 0 | 1 | 47.555 |
35541108 | GC-AG | 0 | 1.000000099473604e-05 | 450 | rna-XM_009697890.1 6831629 | 9 | 9709 | 10158 | Cariama cristata 54380 | GTG|GCAAGTACAA...ACAATTTTACTT/AACAATTTTACT...TTTAG|GTG | 1 | 1 | 53.586 |
35541109 | GT-AG | 0 | 0.0001635189444694 | 2509 | rna-XM_009697890.1 6831629 | 10 | 10282 | 12790 | Cariama cristata 54380 | CAG|GTACGCAGCC...TAAATTTTAATT/TAAATTTTAATT...TTTAG|ATT | 1 | 1 | 58.598 |
35541110 | GT-AG | 0 | 0.0047585793428488 | 1333 | rna-XM_009697890.1 6831629 | 11 | 13270 | 14602 | Cariama cristata 54380 | AAG|GTAACTATTT...TTACTTTTGACT/TTTTATTTTACT...CCTAG|GAA | 0 | 1 | 78.117 |
35541111 | GT-AG | 0 | 2.7506486627190157e-05 | 278 | rna-XM_009697890.1 6831629 | 12 | 14641 | 14918 | Cariama cristata 54380 | AAG|GTACGTCAAT...GTTTTTTTACCT/GGTTTTTTTACC...TACAG|ATC | 2 | 1 | 79.666 |
35541112 | GT-AG | 0 | 1.2596011632700334e-05 | 429 | rna-XM_009697890.1 6831629 | 13 | 15206 | 15634 | Cariama cristata 54380 | ATG|GTACTGAGAT...GTATTTTTAACT/TTTTAACTGATT...TTTAG|ATT | 1 | 1 | 91.361 |
35541113 | GT-AG | 0 | 1.000000099473604e-05 | 3886 | rna-XM_009697890.1 6831629 | 14 | 15763 | 19648 | Cariama cristata 54380 | CAG|GTAAGCAAAA...AAATTTATATTC/TCCAAATTTATA...TTCAG|GGC | 0 | 1 | 96.577 |
35541114 | GT-AG | 0 | 0.08484613653885 | 2314 | rna-XM_009697890.1 6831629 | 1 | 1004 | 3317 | Cariama cristata 54380 | CTG|GTATTTTTTA...AAGTTGTTAATA/AAGTTGTTAATA...GAAAG|ATA | 0 | 2.445 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);