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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 6831629

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Suggested facets: dinucleotide_pair, score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541101 GT-AG 0 1.000000099473604e-05 903 rna-XM_009697890.1 6831629 2 3341 4243 Cariama cristata 54380 AAG|GTAAGTGGAA...ATTTCCTTATTT/TATTTCCTTATT...AACAG|ATG 0 1 2.689
35541102 GT-AG 0 1.000000099473604e-05 900 rna-XM_009697890.1 6831629 3 4665 5564 Cariama cristata 54380 TGG|GTAAGATACC...TATTTTTTATGT/ATATTTTTTATG...CACAG|CTA 1 1 19.845
35541103 GT-AG 0 0.0035425541292686 171 rna-XM_009697890.1 6831629 4 5701 5871 Cariama cristata 54380 TCT|GTATGTAGAT...TGCTTTTTAGGT/TTGCTTTTTAGG...TCTAG|AAA 2 1 25.387
35541104 GT-AG 0 0.0076645947821609 580 rna-XM_009697890.1 6831629 5 6040 6619 Cariama cristata 54380 CTT|GTGTTCCTTA...TTGGTTTTGGCT/TGCATTGTCAGT...TCTAG|CCC 2 1 32.233
35541105 GT-AG 0 1.000000099473604e-05 371 rna-XM_009697890.1 6831629 6 6749 7119 Cariama cristata 54380 CAG|GTGAGTTTTG...TGTTTCTTTGTG/TATTTTCTAATG...CGTAG|TTT 2 1 37.49
35541106 GT-AG 0 0.0001101368763942 705 rna-XM_009697890.1 6831629 7 7205 7909 Cariama cristata 54380 CAG|GTGGACTTTT...TATCTTTTAATT/TATCTTTTAATT...ACTAG|AAA 0 1 40.954
35541107 GT-AG 0 1.000000099473604e-05 1489 rna-XM_009697890.1 6831629 8 8072 9560 Cariama cristata 54380 GAG|GTGAGGTTTT...TTAATTTTATTC/CATATATTTACT...TAAAG|GAA 0 1 47.555
35541108 GC-AG 0 1.000000099473604e-05 450 rna-XM_009697890.1 6831629 9 9709 10158 Cariama cristata 54380 GTG|GCAAGTACAA...ACAATTTTACTT/AACAATTTTACT...TTTAG|GTG 1 1 53.586
35541109 GT-AG 0 0.0001635189444694 2509 rna-XM_009697890.1 6831629 10 10282 12790 Cariama cristata 54380 CAG|GTACGCAGCC...TAAATTTTAATT/TAAATTTTAATT...TTTAG|ATT 1 1 58.598
35541110 GT-AG 0 0.0047585793428488 1333 rna-XM_009697890.1 6831629 11 13270 14602 Cariama cristata 54380 AAG|GTAACTATTT...TTACTTTTGACT/TTTTATTTTACT...CCTAG|GAA 0 1 78.117
35541111 GT-AG 0 2.7506486627190157e-05 278 rna-XM_009697890.1 6831629 12 14641 14918 Cariama cristata 54380 AAG|GTACGTCAAT...GTTTTTTTACCT/GGTTTTTTTACC...TACAG|ATC 2 1 79.666
35541112 GT-AG 0 1.2596011632700334e-05 429 rna-XM_009697890.1 6831629 13 15206 15634 Cariama cristata 54380 ATG|GTACTGAGAT...GTATTTTTAACT/TTTTAACTGATT...TTTAG|ATT 1 1 91.361
35541113 GT-AG 0 1.000000099473604e-05 3886 rna-XM_009697890.1 6831629 14 15763 19648 Cariama cristata 54380 CAG|GTAAGCAAAA...AAATTTATATTC/TCCAAATTTATA...TTCAG|GGC 0 1 96.577
35541114 GT-AG 0 0.08484613653885 2314 rna-XM_009697890.1 6831629 1 1004 3317 Cariama cristata 54380 CTG|GTATTTTTTA...AAGTTGTTAATA/AAGTTGTTAATA...GAAAG|ATA   0 2.445

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.44ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)