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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

13 rows where transcript_id = 6831627

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541067 GT-AG 0 1.89626150324384e-05 752 rna-XM_009697670.1 6831627 1 215804 216555 Cariama cristata 54380 AAC|GTAAATGCTG...AAGTTTTTATTT/GAAGTTTTTATT...TGTAG|TCG 2 1 2.018
35541068 TA-AT 0 3.3712719869614003 5568 rna-XM_009697670.1 6831627 2 209697 215264 Cariama cristata 54380 TGA|TATTCCTGCT...TGCTCTGTGGTT/AAAATATTTATT...GAAAT|AAC 1 1 23.769
35541069 GT-AG 0 0.0461070541399617 10417 rna-XM_009697670.1 6831627 3 199267 209683 Cariama cristata 54380 GAT|GTATGTTCTA...TCTATTTTATAT/ATCTATTTTATA...TTCAG|ATC 2 1 24.294
35541070 GT-AG 0 0.0049824287031247 27407 rna-XM_009697670.1 6831627 4 171839 199245 Cariama cristata 54380 AGA|GTGCTTTTTT...TTTTTTTTAATT/TTTTTTTTAATT...CAGAG|AAA 2 1 25.141
35541071 GT-AG 0 1.000000099473604e-05 20761 rna-XM_009697670.1 6831627 5 150251 171011 Cariama cristata 54380 AAG|GTAATATTTG...TCTTTCTGAATA/CTCTTTCTGAAT...GACAG|CAT 1 1 58.515
35541072 GT-AG 0 9.053836709613336e-05 12437 rna-XM_009697670.1 6831627 6 137699 150135 Cariama cristata 54380 TTT|GTAAGTATGC...TTTTTTTTGTCC/CTCTCTGTGATT...TGCAG|AGG 2 1 63.156
35541073 GT-AG 0 3.942409401101919e-05 841 rna-XM_009697670.1 6831627 7 136772 137612 Cariama cristata 54380 CTT|GTAAGTATTT...ACCTCATTAAAA/TGGAACCTCATT...TGCAG|CTG 1 1 66.626
35541074 GT-AG 0 1.000000099473604e-05 1695 rna-XM_009697670.1 6831627 8 134892 136586 Cariama cristata 54380 GAG|GTAAGACTCT...GGTGCTTTACTA/GCTTTACTAATG...TTCAG|GAT 0 1 74.092
35541075 GT-AG 0 1.000000099473604e-05 11636 rna-XM_009697670.1 6831627 9 123177 134812 Cariama cristata 54380 TGG|GTAAGTACAT...GAAACCTTGAGA/CTTTGTTTCACC...TGCAG|GAG 1 1 77.28
35541076 GT-AG 0 1.000000099473604e-05 14319 rna-XM_009697670.1 6831627 10 108736 123054 Cariama cristata 54380 ACG|GTGAGTTAAT...TTTTTCTTTTTG/GTTAAAATAATT...TTAAG|GGA 0 1 82.203
35541077 GT-AG 0 5.314741584836973e-05 13725 rna-XM_009697670.1 6831627 11 94929 108653 Cariama cristata 54380 ATG|GTACGTTTCA...TATCCATCAGTT/CGTGGGCTCACA...TGCAG|GTC 1 1 85.513
35541078 GT-AG 0 1.000000099473604e-05 6904 rna-XM_009697670.1 6831627 12 87910 94813 Cariama cristata 54380 CAG|GTTAGTGCTT...TTTTTTCTATCT/TTTTTTTCTATC...GGTAG|ACA 2 1 90.153
35541079 GT-AG 0 1.000000099473604e-05 20711 rna-XM_009697670.1 6831627 13 67135 87845 Cariama cristata 54380 AAT|GTAAGTACCT...ATATTCCTAATA/ATATTCCTAATA...ACCAG|TAT 0 1 92.736

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.003ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)