introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
13 rows where transcript_id = 6831627
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35541067 | GT-AG | 0 | 1.89626150324384e-05 | 752 | rna-XM_009697670.1 6831627 | 1 | 215804 | 216555 | Cariama cristata 54380 | AAC|GTAAATGCTG...AAGTTTTTATTT/GAAGTTTTTATT...TGTAG|TCG | 2 | 1 | 2.018 |
35541068 | TA-AT | 0 | 3.3712719869614003 | 5568 | rna-XM_009697670.1 6831627 | 2 | 209697 | 215264 | Cariama cristata 54380 | TGA|TATTCCTGCT...TGCTCTGTGGTT/AAAATATTTATT...GAAAT|AAC | 1 | 1 | 23.769 |
35541069 | GT-AG | 0 | 0.0461070541399617 | 10417 | rna-XM_009697670.1 6831627 | 3 | 199267 | 209683 | Cariama cristata 54380 | GAT|GTATGTTCTA...TCTATTTTATAT/ATCTATTTTATA...TTCAG|ATC | 2 | 1 | 24.294 |
35541070 | GT-AG | 0 | 0.0049824287031247 | 27407 | rna-XM_009697670.1 6831627 | 4 | 171839 | 199245 | Cariama cristata 54380 | AGA|GTGCTTTTTT...TTTTTTTTAATT/TTTTTTTTAATT...CAGAG|AAA | 2 | 1 | 25.141 |
35541071 | GT-AG | 0 | 1.000000099473604e-05 | 20761 | rna-XM_009697670.1 6831627 | 5 | 150251 | 171011 | Cariama cristata 54380 | AAG|GTAATATTTG...TCTTTCTGAATA/CTCTTTCTGAAT...GACAG|CAT | 1 | 1 | 58.515 |
35541072 | GT-AG | 0 | 9.053836709613336e-05 | 12437 | rna-XM_009697670.1 6831627 | 6 | 137699 | 150135 | Cariama cristata 54380 | TTT|GTAAGTATGC...TTTTTTTTGTCC/CTCTCTGTGATT...TGCAG|AGG | 2 | 1 | 63.156 |
35541073 | GT-AG | 0 | 3.942409401101919e-05 | 841 | rna-XM_009697670.1 6831627 | 7 | 136772 | 137612 | Cariama cristata 54380 | CTT|GTAAGTATTT...ACCTCATTAAAA/TGGAACCTCATT...TGCAG|CTG | 1 | 1 | 66.626 |
35541074 | GT-AG | 0 | 1.000000099473604e-05 | 1695 | rna-XM_009697670.1 6831627 | 8 | 134892 | 136586 | Cariama cristata 54380 | GAG|GTAAGACTCT...GGTGCTTTACTA/GCTTTACTAATG...TTCAG|GAT | 0 | 1 | 74.092 |
35541075 | GT-AG | 0 | 1.000000099473604e-05 | 11636 | rna-XM_009697670.1 6831627 | 9 | 123177 | 134812 | Cariama cristata 54380 | TGG|GTAAGTACAT...GAAACCTTGAGA/CTTTGTTTCACC...TGCAG|GAG | 1 | 1 | 77.28 |
35541076 | GT-AG | 0 | 1.000000099473604e-05 | 14319 | rna-XM_009697670.1 6831627 | 10 | 108736 | 123054 | Cariama cristata 54380 | ACG|GTGAGTTAAT...TTTTTCTTTTTG/GTTAAAATAATT...TTAAG|GGA | 0 | 1 | 82.203 |
35541077 | GT-AG | 0 | 5.314741584836973e-05 | 13725 | rna-XM_009697670.1 6831627 | 11 | 94929 | 108653 | Cariama cristata 54380 | ATG|GTACGTTTCA...TATCCATCAGTT/CGTGGGCTCACA...TGCAG|GTC | 1 | 1 | 85.513 |
35541078 | GT-AG | 0 | 1.000000099473604e-05 | 6904 | rna-XM_009697670.1 6831627 | 12 | 87910 | 94813 | Cariama cristata 54380 | CAG|GTTAGTGCTT...TTTTTTCTATCT/TTTTTTTCTATC...GGTAG|ACA | 2 | 1 | 90.153 |
35541079 | GT-AG | 0 | 1.000000099473604e-05 | 20711 | rna-XM_009697670.1 6831627 | 13 | 67135 | 87845 | Cariama cristata 54380 | AAT|GTAAGTACCT...ATATTCCTAATA/ATATTCCTAATA...ACCAG|TAT | 0 | 1 | 92.736 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);