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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 6831624

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
35541038 GT-AG 0 2.6123432213872345e-05 336 rna-XM_009697338.1 6831624 1 2597 2932 Cariama cristata 54380 AAG|GTACTGTTAT...CATTTCTTGTTT/TGAATACTAATG...TTTAG|GGA 2 1 5.565
35541039 GT-AG 0 1.000000099473604e-05 1462 rna-XM_009697338.1 6831624 2 3008 4469 Cariama cristata 54380 GAA|GTTGGTGCAT...CATCTTTTATTG/TATTAATTAACT...TCCAG|AGT 2 1 9.824
35541040 GT-AG 0 1.000000099473604e-05 1163 rna-XM_009697338.1 6831624 3 4589 5751 Cariama cristata 54380 CAA|GTGAGTATTT...ACTACTGTAATC/GCAGATTTAATC...TGCAG|CTG 1 1 16.581
35541041 GT-AG 0 1.000000099473604e-05 394 rna-XM_009697338.1 6831624 4 5852 6245 Cariama cristata 54380 CTG|GTAAATAACA...TTTTTCTTTAAA/TTGTTTCTAATT...TGTAG|GTG 2 1 22.26
35541042 GT-AG 0 0.0057125864789773 1300 rna-XM_009697338.1 6831624 5 6329 7628 Cariama cristata 54380 TTA|GTACGCAAGT...TTGTCATTAACA/TGGTTTGTCATT...TGCAG|ACA 1 1 26.973
35541043 GT-AG 0 4.5201249080401605e-05 141 rna-XM_009697338.1 6831624 6 7703 7843 Cariama cristata 54380 AAG|GTACTTATGA...AATCTCATGACT/TAAAATCTCATG...TTTAG|GTT 0 1 31.175
35541044 GT-AG 0 1.000000099473604e-05 898 rna-XM_009697338.1 6831624 7 7989 8886 Cariama cristata 54380 AAG|GTATAGCAGC...TTTGCAGTAACT/GTTTATATAATT...GTTAG|CCA 1 1 39.409
35541045 GT-AG 0 2.2943158752042203e-05 2477 rna-XM_009697338.1 6831624 8 9004 11480 Cariama cristata 54380 TGC|GTAAGTAGCT...TCTTCCTTTTCC/AGTCTGCTAACA...TTTAG|CAA 1 1 46.053
35541046 GT-AG 0 1.000000099473604e-05 1352 rna-XM_009697338.1 6831624 9 12053 13404 Cariama cristata 54380 CTT|GTAAGTAGAC...TAACTGTTAATT/TAACTGTTAATT...TGCAG|CAC 0 1 78.535
35541047 GT-AG 0 1.000000099473604e-05 1306 rna-XM_009697338.1 6831624 10 13522 14827 Cariama cristata 54380 CAG|GTACTGCAAC...ATTTTCTAGATA/ATTTGTTTTATG...TACAG|GAG 0 1 85.179
35541048 GT-AG 0 1.000000099473604e-05 963 rna-XM_009697338.1 6831624 11 14957 15919 Cariama cristata 54380 AAG|GTGAGGGGAT...TTGTCTTTTTTT/TTTTGTGTCAGT...TACAG|AAA 0 1 92.504
35541049 GT-AG 0 1.9892399598889336e-05 84 rna-XM_009697338.1 6831624 12 15986 16069 Cariama cristata 54380 CAG|GTACTGTTAA...TTCATTTTATAA/TTTCATTTTATA...TCTAG|TTG 0 1 96.252

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.567ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)