introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 6831624
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35541038 | GT-AG | 0 | 2.6123432213872345e-05 | 336 | rna-XM_009697338.1 6831624 | 1 | 2597 | 2932 | Cariama cristata 54380 | AAG|GTACTGTTAT...CATTTCTTGTTT/TGAATACTAATG...TTTAG|GGA | 2 | 1 | 5.565 |
35541039 | GT-AG | 0 | 1.000000099473604e-05 | 1462 | rna-XM_009697338.1 6831624 | 2 | 3008 | 4469 | Cariama cristata 54380 | GAA|GTTGGTGCAT...CATCTTTTATTG/TATTAATTAACT...TCCAG|AGT | 2 | 1 | 9.824 |
35541040 | GT-AG | 0 | 1.000000099473604e-05 | 1163 | rna-XM_009697338.1 6831624 | 3 | 4589 | 5751 | Cariama cristata 54380 | CAA|GTGAGTATTT...ACTACTGTAATC/GCAGATTTAATC...TGCAG|CTG | 1 | 1 | 16.581 |
35541041 | GT-AG | 0 | 1.000000099473604e-05 | 394 | rna-XM_009697338.1 6831624 | 4 | 5852 | 6245 | Cariama cristata 54380 | CTG|GTAAATAACA...TTTTTCTTTAAA/TTGTTTCTAATT...TGTAG|GTG | 2 | 1 | 22.26 |
35541042 | GT-AG | 0 | 0.0057125864789773 | 1300 | rna-XM_009697338.1 6831624 | 5 | 6329 | 7628 | Cariama cristata 54380 | TTA|GTACGCAAGT...TTGTCATTAACA/TGGTTTGTCATT...TGCAG|ACA | 1 | 1 | 26.973 |
35541043 | GT-AG | 0 | 4.5201249080401605e-05 | 141 | rna-XM_009697338.1 6831624 | 6 | 7703 | 7843 | Cariama cristata 54380 | AAG|GTACTTATGA...AATCTCATGACT/TAAAATCTCATG...TTTAG|GTT | 0 | 1 | 31.175 |
35541044 | GT-AG | 0 | 1.000000099473604e-05 | 898 | rna-XM_009697338.1 6831624 | 7 | 7989 | 8886 | Cariama cristata 54380 | AAG|GTATAGCAGC...TTTGCAGTAACT/GTTTATATAATT...GTTAG|CCA | 1 | 1 | 39.409 |
35541045 | GT-AG | 0 | 2.2943158752042203e-05 | 2477 | rna-XM_009697338.1 6831624 | 8 | 9004 | 11480 | Cariama cristata 54380 | TGC|GTAAGTAGCT...TCTTCCTTTTCC/AGTCTGCTAACA...TTTAG|CAA | 1 | 1 | 46.053 |
35541046 | GT-AG | 0 | 1.000000099473604e-05 | 1352 | rna-XM_009697338.1 6831624 | 9 | 12053 | 13404 | Cariama cristata 54380 | CTT|GTAAGTAGAC...TAACTGTTAATT/TAACTGTTAATT...TGCAG|CAC | 0 | 1 | 78.535 |
35541047 | GT-AG | 0 | 1.000000099473604e-05 | 1306 | rna-XM_009697338.1 6831624 | 10 | 13522 | 14827 | Cariama cristata 54380 | CAG|GTACTGCAAC...ATTTTCTAGATA/ATTTGTTTTATG...TACAG|GAG | 0 | 1 | 85.179 |
35541048 | GT-AG | 0 | 1.000000099473604e-05 | 963 | rna-XM_009697338.1 6831624 | 11 | 14957 | 15919 | Cariama cristata 54380 | AAG|GTGAGGGGAT...TTGTCTTTTTTT/TTTTGTGTCAGT...TACAG|AAA | 0 | 1 | 92.504 |
35541049 | GT-AG | 0 | 1.9892399598889336e-05 | 84 | rna-XM_009697338.1 6831624 | 12 | 15986 | 16069 | Cariama cristata 54380 | CAG|GTACTGTTAA...TTCATTTTATAA/TTTCATTTTATA...TCTAG|TTG | 0 | 1 | 96.252 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);